BLASTX nr result

ID: Panax21_contig00021116 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00021116
         (351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34688.3| unnamed protein product [Vitis vinifera]              113   1e-23
ref|XP_002269627.2| PREDICTED: RNA-binding protein NOB1-like [Vi...   111   7e-23
emb|CAN66411.1| hypothetical protein VITISV_020978 [Vitis vinifera]   108   5e-22
ref|XP_004159959.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding ...   104   9e-21
ref|XP_004143919.1| PREDICTED: RNA-binding protein NOB1-like [Cu...   104   9e-21

>emb|CBI34688.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  113 bits (283), Expect = 1e-23
 Identities = 64/117 (54%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
 Frame = -2

Query: 350 IFPISTMEPAPAPCWSNVVK-QXXXXPNQHQNGQAAAFVADRVFVGNCKSTKGXXXXXXX 174
           +F +S   P+ APCWSN+VK Q    P+ HQ     A +   + VG+CKS+KG       
Sbjct: 9   LFFLSLEPPSQAPCWSNIVKAQPPPKPHHHQQ----ALIPPNLPVGSCKSSKGISIAVVD 64

Query: 173 XXAIIQGGENLHNRADKFVSVSEVIDEVRDPRSRHSFNLLPFSVDTMEPSSDSLKKV 3
             AIIQGGE L   ADKFVSVSEVIDEVRDP SRH    +PF++DTMEPS +SLKKV
Sbjct: 65  ATAIIQGGEQLTRCADKFVSVSEVIDEVRDPVSRHKLAFVPFTIDTMEPSPESLKKV 121


>ref|XP_002269627.2| PREDICTED: RNA-binding protein NOB1-like [Vitis vinifera]
          Length = 633

 Score =  111 bits (277), Expect = 7e-23
 Identities = 62/109 (56%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
 Frame = -2

Query: 326 PAPAPCWSNVVK-QXXXXPNQHQNGQAAAFVADRVFVGNCKSTKGXXXXXXXXXAIIQGG 150
           P+ APCWSN+VK Q    P+ HQ     A +   + VG+CKS+KG         AIIQGG
Sbjct: 5   PSQAPCWSNIVKAQPPPKPHHHQQ----ALIPPNLPVGSCKSSKGISIAVVDATAIIQGG 60

Query: 149 ENLHNRADKFVSVSEVIDEVRDPRSRHSFNLLPFSVDTMEPSSDSLKKV 3
           E L   ADKFVSVSEVIDEVRDP SRH    +PF++DTMEPS +SLKKV
Sbjct: 61  EQLTRCADKFVSVSEVIDEVRDPVSRHKLAFVPFTIDTMEPSPESLKKV 109


>emb|CAN66411.1| hypothetical protein VITISV_020978 [Vitis vinifera]
          Length = 621

 Score =  108 bits (270), Expect = 5e-22
 Identities = 61/109 (55%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
 Frame = -2

Query: 326 PAPAPCWSNVVK-QXXXXPNQHQNGQAAAFVADRVFVGNCKSTKGXXXXXXXXXAIIQGG 150
           P+ APCWSN+VK Q    P+ HQ     A +   + VG+CKS+KG         AIIQGG
Sbjct: 5   PSQAPCWSNIVKAQPPPKPHXHQQ----ALIPPNLPVGSCKSSKGISIAVVDATAIIQGG 60

Query: 149 ENLHNRADKFVSVSEVIDEVRDPRSRHSFNLLPFSVDTMEPSSDSLKKV 3
           E L   ADKFVSVSEVIDEVRDP S H    +PF++DTMEPS +SLKKV
Sbjct: 61  EQLTRCADKFVSVSEVIDEVRDPVSXHKLAFVPFTIDTMEPSPESLKKV 109


>ref|XP_004159959.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein NOB1-like
           [Cucumis sativus]
          Length = 617

 Score =  104 bits (259), Expect = 9e-21
 Identities = 53/108 (49%), Positives = 70/108 (64%)
 Frame = -2

Query: 326 PAPAPCWSNVVKQXXXXPNQHQNGQAAAFVADRVFVGNCKSTKGXXXXXXXXXAIIQGGE 147
           P+PA CWSNVVK       QHQ   ++     +VF  +CKS+KG         AIIQGG+
Sbjct: 4   PSPASCWSNVVKTQPAPKPQHQTPSSSV----QVFADSCKSSKGVAVAVVDANAIIQGGD 59

Query: 146 NLHNRADKFVSVSEVIDEVRDPRSRHSFNLLPFSVDTMEPSSDSLKKV 3
            L + ADKFVSV EV+DE+RDP SRH    +PF++++M+PS D+L KV
Sbjct: 60  KLSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKV 107


>ref|XP_004143919.1| PREDICTED: RNA-binding protein NOB1-like [Cucumis sativus]
          Length = 617

 Score =  104 bits (259), Expect = 9e-21
 Identities = 53/108 (49%), Positives = 70/108 (64%)
 Frame = -2

Query: 326 PAPAPCWSNVVKQXXXXPNQHQNGQAAAFVADRVFVGNCKSTKGXXXXXXXXXAIIQGGE 147
           P+PA CWSNVVK       QHQ   ++     +VF  +CKS+KG         AIIQGG+
Sbjct: 4   PSPASCWSNVVKTQPAPKPQHQTPSSSV----QVFADSCKSSKGVAVAVVDANAIIQGGD 59

Query: 146 NLHNRADKFVSVSEVIDEVRDPRSRHSFNLLPFSVDTMEPSSDSLKKV 3
            L + ADKFVSV EV+DE+RDP SRH    +PF++++M+PS D+L KV
Sbjct: 60  KLSSSADKFVSVPEVLDEIRDPVSRHRLAFVPFTLESMDPSPDALNKV 107


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