BLASTX nr result

ID: Panax21_contig00021049 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00021049
         (791 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004142658.1| PREDICTED: RNA exonuclease 4-like [Cucumis s...    65   2e-08
ref|XP_002524814.1| exonuclease, putative [Ricinus communis] gi|...    65   2e-08
ref|XP_002302830.1| predicted protein [Populus trichocarpa] gi|2...    59   2e-06

>ref|XP_004142658.1| PREDICTED: RNA exonuclease 4-like [Cucumis sativus]
           gi|449507969|ref|XP_004163181.1| PREDICTED: RNA
           exonuclease 4-like [Cucumis sativus]
          Length = 350

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 35/66 (53%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
 Frame = -3

Query: 789 RMRSQDHPVEV-TGTLTAKCYLAVTNIFNSFQPMDLEKMTPDELFETSKSNYKCWCLDSS 613
           RMRS DH  +V T ++T  C   V    +S    DLEKMTPDEL+E S+SN+KCWC D S
Sbjct: 286 RMRSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHD-S 344

Query: 612 REAMET 595
           R  M+T
Sbjct: 345 RRVMQT 350


>ref|XP_002524814.1| exonuclease, putative [Ricinus communis]
           gi|223535998|gb|EEF37657.1| exonuclease, putative
           [Ricinus communis]
          Length = 365

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 30/58 (51%), Positives = 39/58 (67%)
 Frame = -3

Query: 789 RMRSQDHPVEVTGTLTAKCYLAVTNIFNSFQPMDLEKMTPDELFETSKSNYKCWCLDS 616
           RMR QDH VE +G         ++  F+S +P +LE MT DEL++ S+SNYKCWCLDS
Sbjct: 308 RMRGQDHEVEQSGLR------GISGSFDSLKPKELESMTSDELYDISRSNYKCWCLDS 359


>ref|XP_002302830.1| predicted protein [Populus trichocarpa] gi|222844556|gb|EEE82103.1|
           predicted protein [Populus trichocarpa]
          Length = 349

 Score = 58.5 bits (140), Expect = 2e-06
 Identities = 30/59 (50%), Positives = 39/59 (66%)
 Frame = -3

Query: 789 RMRSQDHPVEVTGTLTAKCYLAVTNIFNSFQPMDLEKMTPDELFETSKSNYKCWCLDSS 613
           RMR+QDH  +  GT  +       + F S +  +LE MTPDEL++ SKS+YKCWCLDSS
Sbjct: 290 RMRAQDHQGKGIGTPDSD------SGFESQKAEELENMTPDELYQISKSDYKCWCLDSS 342


Top