BLASTX nr result

ID: Panax21_contig00020979 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00020979
         (677 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003527944.1| PREDICTED: SWI/SNF complex subunit SWI3C-lik...   292   4e-77
ref|XP_003522572.1| PREDICTED: SWI/SNF complex subunit SWI3C-lik...   292   4e-77
ref|XP_002284548.2| PREDICTED: SWI/SNF complex subunit SWI3C-lik...   291   8e-77
emb|CBI18988.3| unnamed protein product [Vitis vinifera]              291   8e-77
ref|XP_002306648.1| chromatin remodeling complex subunit [Populu...   288   7e-76

>ref|XP_003527944.1| PREDICTED: SWI/SNF complex subunit SWI3C-like [Glycine max]
          Length = 785

 Score =  292 bits (748), Expect = 4e-77
 Identities = 143/228 (62%), Positives = 168/228 (73%), Gaps = 4/228 (1%)
 Frame = +2

Query: 2    CNYCARPLPIMYYQSQKEVDVLLCLDCFHEGRFITGHSSLDFTRVDSGKDYGDLDGENWT 181
            CNYC+ PLP++YYQSQKEVD+LLC DCFH+GRF+ GHSS+DF RVDS +DYG+LDG+NWT
Sbjct: 341  CNYCSCPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFVRVDSTRDYGELDGDNWT 400

Query: 182  DQETLLLLEAMEIYSENWNEIAEHVGTKSKAQCILHFLRLPMDDSSLENVEVPSTPIPLN 361
            DQETLLLLEAMEIY+ENWNEIAEHVGTKSKAQCILHFLRLPM+D   EN+ VPS  +  N
Sbjct: 401  DQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKFENINVPSLSLSSN 460

Query: 362  ISKNDECERSHSNSNAAT-GSSLQDPDSDTRLPFANYANPVMALVAFLASAVGPRVXXXX 538
                D+  R H  SN  T G   Q  DSD RLPFAN  NPVMALVAFLASAVGPRV    
Sbjct: 461  AINRDDSGRLHCYSNGVTAGPVYQTRDSDHRLPFANSGNPVMALVAFLASAVGPRVAASC 520

Query: 539  XXXXXXXXXEEDHG---QIDGSGCGNRMNSENMHGKEGGPHGDITKSS 673
                     E++ G   Q++  G  NR NSE++H ++GGPH +   S+
Sbjct: 521  AHAALAVLSEDNSGSTSQLEAPGHDNRTNSESIHYRDGGPHQETAVSN 568


>ref|XP_003522572.1| PREDICTED: SWI/SNF complex subunit SWI3C-like [Glycine max]
          Length = 785

 Score =  292 bits (748), Expect = 4e-77
 Identities = 143/227 (62%), Positives = 167/227 (73%), Gaps = 3/227 (1%)
 Frame = +2

Query: 2    CNYCARPLPIMYYQSQKEVDVLLCLDCFHEGRFITGHSSLDFTRVDSGKDYGDLDGENWT 181
            CNYC+ PLP++YYQSQKEVD+LLC DCFH+GRF+ GHSS+DF RVDS +DYG+LDG++WT
Sbjct: 340  CNYCSCPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFVRVDSTRDYGELDGDSWT 399

Query: 182  DQETLLLLEAMEIYSENWNEIAEHVGTKSKAQCILHFLRLPMDDSSLENVEVPSTPIPLN 361
            DQETLLLLEAMEIY+ENWNEIAEHVGTKSKAQCILHFLRLPM+D  LEN+ VPS  +  N
Sbjct: 400  DQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSLSSN 459

Query: 362  ISKNDECERSHSNSNAATGSSLQDPDSDTRLPFANYANPVMALVAFLASAVGPRVXXXXX 541
                D   R H  SN  T       DSD RLPFAN  NPVMALVAFLASAVGPRV     
Sbjct: 460  AINRDHSGRLHCYSNGDTA------DSDNRLPFANSGNPVMALVAFLASAVGPRVAASCA 513

Query: 542  XXXXXXXXEEDHG---QIDGSGCGNRMNSENMHGKEGGPHGDITKSS 673
                    E++ G   Q++  G  NR NSEN+H ++GGPHG+   S+
Sbjct: 514  HAALAVLSEDNSGSTSQMEAPGHDNRTNSENIHCRDGGPHGETAVSN 560


>ref|XP_002284548.2| PREDICTED: SWI/SNF complex subunit SWI3C-like [Vitis vinifera]
          Length = 771

 Score =  291 bits (745), Expect = 8e-77
 Identities = 150/234 (64%), Positives = 174/234 (74%), Gaps = 9/234 (3%)
 Frame = +2

Query: 2    CNYCARPLPIMYYQSQKEVDVLLCLDCFHEGRFITGHSSLDFTRVDSGKDYGDLDGENWT 181
            CNYC+RPLPI YYQSQKEVDV+LC DCF+EGRF+TGHSS+DF R+DS KDYGD+D E+W+
Sbjct: 347  CNYCSRPLPIGYYQSQKEVDVMLCTDCFYEGRFVTGHSSIDFIRLDSTKDYGDIDSESWS 406

Query: 182  DQETLLLLEAMEIYSENWNEIAEHVGTKSKAQCILHFLRLPMDDSSLENVEVPSTPIPLN 361
            DQETLLLLEAME Y+ENWN+IAEHVGTKSKAQCILHF+R+PM+D  LEN+EVPS P   N
Sbjct: 407  DQETLLLLEAMESYNENWNDIAEHVGTKSKAQCILHFIRMPMEDGLLENIEVPSMPTLSN 466

Query: 362  ISKNDECERSHSNSNA-ATGSSLQDPDSDTRLPFANYANPVMALVAFLASAVGPRVXXXX 538
                 + ERSHSNSN    GS L   DSD+RLPFAN  NPVM++VAFLA+AVGPRV    
Sbjct: 467  SLNKVDQERSHSNSNGNLAGSCLPGLDSDSRLPFANSGNPVMSMVAFLATAVGPRVAAAC 526

Query: 539  XXXXXXXXXEED-----HGQI---DGSGCGNRMNSENMHGKEGGPHGDITKSSQ 676
                     EE+      G I   +GSG GNRM       KEGGPHG++T SSQ
Sbjct: 527  AHASLIALSEENALAAASGFIIPPEGSGHGNRM-------KEGGPHGELTNSSQ 573


>emb|CBI18988.3| unnamed protein product [Vitis vinifera]
          Length = 675

 Score =  291 bits (745), Expect = 8e-77
 Identities = 150/234 (64%), Positives = 174/234 (74%), Gaps = 9/234 (3%)
 Frame = +2

Query: 2   CNYCARPLPIMYYQSQKEVDVLLCLDCFHEGRFITGHSSLDFTRVDSGKDYGDLDGENWT 181
           CNYC+RPLPI YYQSQKEVDV+LC DCF+EGRF+TGHSS+DF R+DS KDYGD+D E+W+
Sbjct: 229 CNYCSRPLPIGYYQSQKEVDVMLCTDCFYEGRFVTGHSSIDFIRLDSTKDYGDIDSESWS 288

Query: 182 DQETLLLLEAMEIYSENWNEIAEHVGTKSKAQCILHFLRLPMDDSSLENVEVPSTPIPLN 361
           DQETLLLLEAME Y+ENWN+IAEHVGTKSKAQCILHF+R+PM+D  LEN+EVPS P   N
Sbjct: 289 DQETLLLLEAMESYNENWNDIAEHVGTKSKAQCILHFIRMPMEDGLLENIEVPSMPTLSN 348

Query: 362 ISKNDECERSHSNSNA-ATGSSLQDPDSDTRLPFANYANPVMALVAFLASAVGPRVXXXX 538
                + ERSHSNSN    GS L   DSD+RLPFAN  NPVM++VAFLA+AVGPRV    
Sbjct: 349 SLNKVDQERSHSNSNGNLAGSCLPGLDSDSRLPFANSGNPVMSMVAFLATAVGPRVAAAC 408

Query: 539 XXXXXXXXXEED-----HGQI---DGSGCGNRMNSENMHGKEGGPHGDITKSSQ 676
                    EE+      G I   +GSG GNRM       KEGGPHG++T SSQ
Sbjct: 409 AHASLIALSEENALAAASGFIIPPEGSGHGNRM-------KEGGPHGELTNSSQ 455


>ref|XP_002306648.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222856097|gb|EEE93644.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 796

 Score =  288 bits (737), Expect = 7e-76
 Identities = 141/225 (62%), Positives = 170/225 (75%)
 Frame = +2

Query: 2   CNYCARPLPIMYYQSQKEVDVLLCLDCFHEGRFITGHSSLDFTRVDSGKDYGDLDGENWT 181
           CN+C++ LP + YQSQKEVD+LLC DCFHEGRF+TGHSSLDF +VDS KDYGD+DGE+W+
Sbjct: 359 CNHCSQLLPSVCYQSQKEVDILLCPDCFHEGRFVTGHSSLDFIKVDSTKDYGDIDGESWS 418

Query: 182 DQETLLLLEAMEIYSENWNEIAEHVGTKSKAQCILHFLRLPMDDSSLENVEVPSTPIPLN 361
           DQETLLLLEAMEIY+ENWNEIAEHVG+KSKAQCILHFLRLP++D  LEN+EVPS P  ++
Sbjct: 419 DQETLLLLEAMEIYNENWNEIAEHVGSKSKAQCILHFLRLPVEDGLLENIEVPSMPKSIS 478

Query: 362 ISKNDECERSHSNSNAATGSSLQDPDSDTRLPFANYANPVMALVAFLASAVGPRVXXXXX 541
            S  ++  R HS+SN   GS LQ  D++ RLPFAN  NPVMALVAFLASAVGPRV     
Sbjct: 479 PSNREDNRRPHSSSN---GSCLQGADAENRLPFANSGNPVMALVAFLASAVGPRVAAACA 535

Query: 542 XXXXXXXXEEDHGQIDGSGCGNRMNSENMHGKEGGPHGDITKSSQ 676
                      H  ++     NR+ SE +HG+EGG HG++  S Q
Sbjct: 536 -----------HASLEALSADNRLGSERLHGREGGFHGEVANSIQ 569


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