BLASTX nr result

ID: Panax21_contig00020955 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00020955
         (361 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309067.1| predicted protein [Populus trichocarpa] gi|2...    69   4e-10
ref|XP_002323511.1| predicted protein [Populus trichocarpa] gi|2...    59   3e-07
ref|XP_002268453.1| PREDICTED: uncharacterized protein LOC100264...    55   5e-06

>ref|XP_002309067.1| predicted protein [Populus trichocarpa] gi|222855043|gb|EEE92590.1|
           predicted protein [Populus trichocarpa]
          Length = 261

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 44/119 (36%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
 Frame = +2

Query: 2   SVDFKNVFEASTVYMNKKRKLQADQLGLPLSKHNSWDRGFASEFGSPSNEIPEREDFCTV 181
           S  FK    +    +NKKRKLQ +Q+GLP+SKH  WD     E  +   E  E +D  T 
Sbjct: 13  SFQFKEAPNSKLFCLNKKRKLQDEQVGLPISKHKCWDHRLPLETSTIYEENQEEKDLITH 72

Query: 182 LSKGKIHVXXXXXXXXXXXXXXXNSIAGDADSNMSVYGEDKNDL-LWKTFSGDDPSTPS 355
           + K                    NS  GD+DS MSV GE K ++ + K +S D PST S
Sbjct: 73  IIKENAERRAIDEGSDPESAKDSNSFVGDSDSAMSVSGEAKLEMEVSKIWSPDRPSTSS 131


>ref|XP_002323511.1| predicted protein [Populus trichocarpa] gi|222868141|gb|EEF05272.1|
           predicted protein [Populus trichocarpa]
          Length = 231

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
 Frame = +2

Query: 2   SVDFKNVFEASTVYMNKKRKLQADQLGLPLSKHNSWDRGFASEFGSPSNEIPEREDFCTV 181
           S   +  F +   Y+NKKRK +A+QLGLP+SKH   D  F  +    +++I E +D  T 
Sbjct: 17  SFQLEEAFNSKCFYLNKKRKTRAEQLGLPISKHKCLDHRFPLK----TSKIYEEKDLITC 72

Query: 182 LSKGKIHVXXXXXXXXXXXXXXXNSIAGDADSNMSVYGEDKNDL-LWKTFSGDDPSTPS 355
           +  G                   NS   D+D  MS+ GE K ++ + K +  D PST S
Sbjct: 73  IITGNAERQAIDEGSDPESAKDSNSFVEDSDFAMSIDGEAKFEMEVSKIWPPDRPSTSS 131


>ref|XP_002268453.1| PREDICTED: uncharacterized protein LOC100264843 [Vitis vinifera]
           gi|297740352|emb|CBI30534.3| unnamed protein product
           [Vitis vinifera]
          Length = 255

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 34/87 (39%), Positives = 45/87 (51%)
 Frame = +2

Query: 44  MNKKRKLQADQLGLPLSKHNSWDRGFASEFGSPSNEIPEREDFCTVLSKGKIHVXXXXXX 223
           + KKRKLQA+ L LPL KH    R F+S+   P +E  E ED    + K + +       
Sbjct: 27  LKKKRKLQAELLDLPLPKHKCCGRSFSSQIVYPLDEDTEIEDLHAQIVKEETNGETIDDG 86

Query: 224 XXXXXXXXXNSIAGDADSNMSVYGEDK 304
                    NS+AG +DS +SVYGE K
Sbjct: 87  SEPDSAKDSNSLAGYSDSVISVYGEAK 113


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