BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00020852
         (468 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_086997.1| RNA polymerase alpha subunit [Panax ginseng] gi...   165   3e-39
ref|YP_004935584.1| RNA polymerase alpha subunit (chloroplast) [...   160   1e-37
ref|YP_740149.1| RNA polymerase alpha subunit [Daucus carota] gi...   138   4e-31
ref|YP_007353946.1| RNA polymerase alpha subunit (chloroplast) [...   126   2e-27
gb|ABU85224.1| RNA polymerase alpha subunit [Anethum graveolens]      126   2e-27

>ref|YP_086997.1| RNA polymerase alpha subunit [Panax ginseng]
           gi|68053096|sp|Q68RX5.1|RPOA_PANGI RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|51235344|gb|AAT98540.1| RNA polymerase alpha subunit
           [Panax ginseng]
          Length = 353

 Score =  165 bits (418), Expect = 3e-39
 Identities = 83/84 (98%), Positives = 84/84 (100%)
 Frame = -1

Query: 468 LKSIFIDQSELPPRIYNCLIRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKAILGILEKHF 289
           LKSIFIDQSELPPRIYNCLIRSNIYTLLDLLNNSQEDLMK+EHFRIEDVKAILGILEKHF
Sbjct: 270 LKSIFIDQSELPPRIYNCLIRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKAILGILEKHF 329

Query: 288 AIDLPKKLKIGFESLAQSIYSESG 217
           AIDLPKKLKIGFESLAQSIYSESG
Sbjct: 330 AIDLPKKLKIGFESLAQSIYSESG 353


>ref|YP_004935584.1| RNA polymerase alpha subunit (chloroplast) [Eleutherococcus
           senticosus] gi|347448239|gb|AEO92651.1| RNA polymerase
           alpha subunit (chloroplast) [Eleutherococcus senticosus]
          Length = 353

 Score =  160 bits (405), Expect = 1e-37
 Identities = 81/84 (96%), Positives = 82/84 (97%)
 Frame = -1

Query: 468 LKSIFIDQSELPPRIYNCLIRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKAILGILEKHF 289
           LKSIFIDQSELPPRIYNCLIRSNIYTLLDLLNNSQEDLMK+EHFRIEDVK ILGILEK F
Sbjct: 270 LKSIFIDQSELPPRIYNCLIRSNIYTLLDLLNNSQEDLMKIEHFRIEDVKEILGILEKRF 329

Query: 288 AIDLPKKLKIGFESLAQSIYSESG 217
           AIDLPKKLKIGFESLAQSIYSESG
Sbjct: 330 AIDLPKKLKIGFESLAQSIYSESG 353


>ref|YP_740149.1| RNA polymerase alpha subunit [Daucus carota]
           gi|122239960|sp|Q0G9T0.1|RPOA_DAUCA RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|113200939|gb|ABI32455.1| RNA polymerase alpha subunit
           [Daucus carota]
          Length = 353

 Score =  138 bits (348), Expect = 4e-31
 Identities = 71/84 (84%), Positives = 78/84 (92%)
 Frame = -1

Query: 468 LKSIFIDQSELPPRIYNCLIRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKAILGILEKHF 289
           LKSIFIDQSELPPRIYNCL RSNIYTLLDLLNNSQEDLMK+EHFRI+DVK ILGILEK+F
Sbjct: 270 LKSIFIDQSELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRIKDVKQILGILEKNF 329

Query: 288 AIDLPKKLKIGFESLAQSIYSESG 217
           +I+L KK K+GFESLAQ I S+SG
Sbjct: 330 SINLGKKPKMGFESLAQLIDSKSG 353


>ref|YP_007353946.1| RNA polymerase alpha subunit (chloroplast) [Tectona grandis]
           gi|438687635|emb|CCP47162.1| RNA polymerase alpha
           subunit (chloroplast) [Tectona grandis]
           gi|438688319|emb|CCP47251.1| RNA polymerase alpha
           subunit (chloroplast) [Tectona grandis]
           gi|438688443|emb|CCP47340.1| RNA polymerase alpha
           subunit (chloroplast) [Tectona grandis]
          Length = 337

 Score =  126 bits (317), Expect = 2e-27
 Identities = 60/67 (89%), Positives = 65/67 (97%)
 Frame = -1

Query: 468 LKSIFIDQSELPPRIYNCLIRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKAILGILEKHF 289
           LKSIFIDQSELPPR+YNCL RSNIYTLLDLLNNSQEDLMK+EHFR+EDVK ILG+L+KHF
Sbjct: 269 LKSIFIDQSELPPRVYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRLEDVKQILGVLKKHF 328

Query: 288 AIDLPKK 268
           AIDLPKK
Sbjct: 329 AIDLPKK 335


>gb|ABU85224.1| RNA polymerase alpha subunit [Anethum graveolens]
          Length = 338

 Score =  126 bits (317), Expect = 2e-27
 Identities = 62/67 (92%), Positives = 64/67 (95%)
 Frame = -1

Query: 468 LKSIFIDQSELPPRIYNCLIRSNIYTLLDLLNNSQEDLMKMEHFRIEDVKAILGILEKHF 289
           LKSIFIDQSELPPRIYNCL RSNIYTLLDLLNNSQEDLMK+EHFRI DVK ILGILEKHF
Sbjct: 272 LKSIFIDQSELPPRIYNCLKRSNIYTLLDLLNNSQEDLMKIEHFRINDVKQILGILEKHF 331

Query: 288 AIDLPKK 268
           +IDLPKK
Sbjct: 332 SIDLPKK 338