BLASTX nr result

ID: Panax21_contig00020628 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00020628
         (439 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29756.3| unnamed protein product [Vitis vinifera]              121   4e-31
ref|XP_002265586.1| PREDICTED: ATP-dependent DNA helicase Q-like...   121   4e-31
ref|XP_002303149.1| predicted protein [Populus trichocarpa] gi|2...   124   5e-31
ref|XP_002530679.1| DNA helicase hus2, putative [Ricinus communi...   129   7e-31
ref|XP_004146283.1| PREDICTED: ATP-dependent DNA helicase Q-like...   130   1e-28

>emb|CBI29756.3| unnamed protein product [Vitis vinifera]
          Length = 1235

 Score =  121 bits (304), Expect(2) = 4e-31
 Identities = 65/110 (59%), Positives = 71/110 (64%)
 Frame = +1

Query: 106 REPYIPKYVDVNYIKGSNDKMWSSREFHCTTKLEVYTYTNLKVFNLP*MLSLLLFIFFTP 285
           REPYIPK ++VNYI+GS+DK WSS  F  T KLE                          
Sbjct: 394 REPYIPKLIEVNYIEGSSDKKWSSGNFPWTKKLEA------------------------- 428

Query: 286 KDNNKRVFGNHSFRPNQKEVINVTMS*RDVFVLMPTGGGKSLTYQLPAYI 435
             NNK+VFGNHSFRPNQ+EVIN TMS  DVFVLMPTGGGKSLTYQLPA I
Sbjct: 429 --NNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALI 476



 Score = 38.1 bits (87), Expect(2) = 4e-31
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 9/43 (20%)
 Frame = +3

Query: 6   IDPVRLESQFHIHNEPDGFDRLNSS---------FGVPPTPIE 107
           IDP+R ++Q H+ NEP  +++ N+S         FGV P P+E
Sbjct: 351 IDPMRFDAQVHLRNEPGNYEKWNTSSVSFSSIDRFGVTPYPLE 393


>ref|XP_002265586.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Vitis
           vinifera]
          Length = 1224

 Score =  121 bits (304), Expect(2) = 4e-31
 Identities = 65/110 (59%), Positives = 71/110 (64%)
 Frame = +1

Query: 106 REPYIPKYVDVNYIKGSNDKMWSSREFHCTTKLEVYTYTNLKVFNLP*MLSLLLFIFFTP 285
           REPYIPK ++VNYI+GS+DK WSS  F  T KLE                          
Sbjct: 383 REPYIPKLIEVNYIEGSSDKKWSSGNFPWTKKLEA------------------------- 417

Query: 286 KDNNKRVFGNHSFRPNQKEVINVTMS*RDVFVLMPTGGGKSLTYQLPAYI 435
             NNK+VFGNHSFRPNQ+EVIN TMS  DVFVLMPTGGGKSLTYQLPA I
Sbjct: 418 --NNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALI 465



 Score = 38.1 bits (87), Expect(2) = 4e-31
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 9/43 (20%)
 Frame = +3

Query: 6   IDPVRLESQFHIHNEPDGFDRLNSS---------FGVPPTPIE 107
           IDP+R ++Q H+ NEP  +++ N+S         FGV P P+E
Sbjct: 340 IDPMRFDAQVHLRNEPGNYEKWNTSSVSFSSIDRFGVTPYPLE 382


>ref|XP_002303149.1| predicted protein [Populus trichocarpa] gi|222840581|gb|EEE78128.1|
           predicted protein [Populus trichocarpa]
          Length = 1194

 Score =  124 bits (312), Expect(2) = 5e-31
 Identities = 65/111 (58%), Positives = 71/111 (63%)
 Frame = +1

Query: 106 REPYIPKYVDVNYIKGSNDKMWSSREFHCTTKLEVYTYTNLKVFNLP*MLSLLLFIFFTP 285
           REPYIP +V+VNYI+GSND  WSS  F  T KLE                          
Sbjct: 414 REPYIPSFVEVNYIEGSNDPKWSSTNFPWTKKLEA------------------------- 448

Query: 286 KDNNKRVFGNHSFRPNQKEVINVTMS*RDVFVLMPTGGGKSLTYQLPAYIC 438
             NNK+VFGNHSFRPNQ+EVIN TMS  DVFVLMPTGGGKSLTYQLPA +C
Sbjct: 449 --NNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALVC 497



 Score = 34.7 bits (78), Expect(2) = 5e-31
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 9/44 (20%)
 Frame = +3

Query: 3   RIDPVRLESQFHIHNEPDGFDRLNS---------SFGVPPTPIE 107
           +IDP+R ++Q H+ N+ +G+++ N+         SFGV   P+E
Sbjct: 370 KIDPMRFDAQVHLRNDLNGYEKWNAPSVSFSSIDSFGVSSVPLE 413


>ref|XP_002530679.1| DNA helicase hus2, putative [Ricinus communis]
           gi|223529772|gb|EEF31710.1| DNA helicase hus2, putative
           [Ricinus communis]
          Length = 1233

 Score =  129 bits (323), Expect(2) = 7e-31
 Identities = 67/111 (60%), Positives = 73/111 (65%)
 Frame = +1

Query: 106 REPYIPKYVDVNYIKGSNDKMWSSREFHCTTKLEVYTYTNLKVFNLP*MLSLLLFIFFTP 285
           REPYIPK+V+VNYI+GSND  WSS  F  TTKLE Y                        
Sbjct: 415 REPYIPKFVEVNYIEGSNDPKWSSTNFPWTTKLEAY------------------------ 450

Query: 286 KDNNKRVFGNHSFRPNQKEVINVTMS*RDVFVLMPTGGGKSLTYQLPAYIC 438
              NK+VFGNHSFRPNQ+EVIN TMS  DVFVLMPTGGGKSLTYQLPA +C
Sbjct: 451 ---NKKVFGNHSFRPNQREVINATMSGFDVFVLMPTGGGKSLTYQLPALVC 498



 Score = 30.0 bits (66), Expect(2) = 7e-31
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
 Frame = +3

Query: 3   RIDPVRLESQFHIHNEPDGFDRLNS---------SFGVPPTPIE 107
           +IDP+R ++Q ++ NE  G++  N+          FG+   PIE
Sbjct: 371 KIDPMRFDAQVYLRNESGGYESWNTPSISFSSVDRFGISSGPIE 414


>ref|XP_004146283.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like, partial
           [Cucumis sativus] gi|449511185|ref|XP_004163888.1|
           PREDICTED: ATP-dependent DNA helicase Q-like 4A-like,
           partial [Cucumis sativus]
          Length = 1269

 Score =  130 bits (326), Expect = 1e-28
 Identities = 68/111 (61%), Positives = 73/111 (65%)
 Frame = +1

Query: 106 REPYIPKYVDVNYIKGSNDKMWSSREFHCTTKLEVYTYTNLKVFNLP*MLSLLLFIFFTP 285
           REPYIPK +DVNYI+GSNDK WSSR F  T +LE                          
Sbjct: 473 REPYIPKVIDVNYIEGSNDKKWSSRNFSWTKELEA------------------------- 507

Query: 286 KDNNKRVFGNHSFRPNQKEVINVTMS*RDVFVLMPTGGGKSLTYQLPAYIC 438
             NNK+VFGNHSFRPNQ+EVIN TMS  DVFVLMPTGGGKSLTYQLPA IC
Sbjct: 508 --NNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALIC 556


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