BLASTX nr result

ID: Panax21_contig00020613 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00020613
         (440 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_196344.2| E3 ubiquitin-protein ligase XBAT33 [Arabidopsis...    55   8e-06
emb|CAB87283.1| putative protein [Arabidopsis thaliana]                55   8e-06
ref|XP_003633983.1| PREDICTED: uncharacterized protein LOC100255...    54   1e-05
emb|CBI40499.3| unnamed protein product [Vitis vinifera]               54   1e-05

>ref|NP_196344.2| E3 ubiquitin-protein ligase XBAT33 [Arabidopsis thaliana]
           gi|122239678|sp|Q4FE45.1|XB33_ARATH RecName: Full=E3
           ubiquitin-protein ligase XBAT33; AltName: Full=Ankyrin
           repeat domain and RING finger-containing protein XBAT33;
           AltName: Full=Protein XB3 homolog 3
           gi|70905089|gb|AAZ14070.1| At5g07270 [Arabidopsis
           thaliana] gi|117168057|gb|ABK32111.1| At5g07270
           [Arabidopsis thaliana] gi|332003748|gb|AED91131.1| E3
           ubiquitin-protein ligase XBAT33 [Arabidopsis thaliana]
          Length = 513

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = +1

Query: 16  TISSDVFCPVTCSPFPSVGIPLCTCASPFILSSEIH 123
           ++SSD+FCPVTCSPFPSV IP+CTC      + E H
Sbjct: 420 SVSSDIFCPVTCSPFPSVNIPMCTCNEGTCPNFETH 455


>emb|CAB87283.1| putative protein [Arabidopsis thaliana]
          Length = 519

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 22/36 (61%), Positives = 27/36 (75%)
 Frame = +1

Query: 16  TISSDVFCPVTCSPFPSVGIPLCTCASPFILSSEIH 123
           ++SSD+FCPVTCSPFPSV IP+CTC      + E H
Sbjct: 426 SVSSDIFCPVTCSPFPSVNIPMCTCNEGTCPNFETH 461


>ref|XP_003633983.1| PREDICTED: uncharacterized protein LOC100255153 [Vitis vinifera]
          Length = 892

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 33/66 (50%), Positives = 39/66 (59%)
 Frame = -1

Query: 281 AYITPW*LMLTSESQEGKVTLTQPS*C*YYAKCRKRSEGASLVLEGRHNADKGWISELRM 102
           AYITPW       ++      T  S   Y      RS+G +LVLEGRHNAD GWI+ELRM
Sbjct: 111 AYITPWNNKGYDLAKSFNSKFTHLSPIWYDL----RSQGTNLVLEGRHNADIGWITELRM 166

Query: 101 KGEAQV 84
           KG+A V
Sbjct: 167 KGDAWV 172


>emb|CBI40499.3| unnamed protein product [Vitis vinifera]
          Length = 435

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 33/66 (50%), Positives = 39/66 (59%)
 Frame = -1

Query: 281 AYITPW*LMLTSESQEGKVTLTQPS*C*YYAKCRKRSEGASLVLEGRHNADKGWISELRM 102
           AYITPW       ++      T  S   Y      RS+G +LVLEGRHNAD GWI+ELRM
Sbjct: 111 AYITPWNNKGYDLAKSFNSKFTHLSPIWYDL----RSQGTNLVLEGRHNADIGWITELRM 166

Query: 101 KGEAQV 84
           KG+A V
Sbjct: 167 KGDAWV 172


Top