BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00020607
         (1781 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                     499   e-170
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   489   e-164
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   480   e-160
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   470   e-160
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     470   e-160

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  499 bits (1284), Expect(2) = e-170
 Identities = 250/371 (67%), Positives = 297/371 (80%), Gaps = 5/371 (1%)
 Frame = +1

Query: 649  LKQASRRWNIRFDETIKEFNFIKNEDEPCVYKEVSGNAVSFLILYVDDILLIGNDILMLQ 828
            LKQASR WNIRFDE IK F FIKNE+E CVYK+VSG+A+ FLILYVDDILLIGNDI ML+
Sbjct: 947  LKQASRSWNIRFDEVIKGFGFIKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLE 1006

Query: 829  SIKIWLSKHFSMKDLGEASHILGIKIYRDRSKRMFDLSQGTYIDSMLKRFSMEDSKRGLM 1008
            S+K  L   FSMKDLGEA++ILGI+IYRDRSKR+  LSQ TYID +LKRF+M DSK+G +
Sbjct: 1007 SVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMHDSKKGFL 1066

Query: 1009 PMSHGIHFSKKQAPKTPDERDRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNP 1188
            PMSHGI+ SK Q P+T DER++M  +PYASAIGSIMY M+CTRPDV++ALS TSRYQS+P
Sbjct: 1067 PMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSIMYAMLCTRPDVSYALSATSRYQSDP 1126

Query: 1189 GEEHWKAVKNILKYL*RTKDMFLVYGGSE-LKLESFTDLSFQTDQNDSKSVSRYVLTLNG 1365
            GE HW AVKNILKYL RTKDMFLVYGG E L +  +TD SFQTD++D +S S +V  LNG
Sbjct: 1127 GEGHWTAVKNILKYLRRTKDMFLVYGGEEDLVVSGYTDASFQTDKDDYRSQSGFVFCLNG 1186

Query: 1366 GAVSWKSSKQQTVADSVTETEYI----AAKEAVWMKKFITELDVVPNIRGPVPLFCDNIR 1533
            GAVSWKSSKQ TVADS TE EYI    AAKEAVW+KKF++EL V+ +  GP+ L+CDN  
Sbjct: 1187 GAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSELGVMTSTTGPMSLYCDNSG 1246

Query: 1534 AVAQVKESMSHQKSKHVLRRFHLIREIIERGDVTLERVDSQDNIADPFTKVLTQQQFDRH 1713
            A+AQ KE  SHQKSKH+LRR+HLIREI++RGDV + +V +  NIADP TK L Q + + H
Sbjct: 1247 AIAQAKEPRSHQKSKHILRRYHLIREIVDRGDVKICKVHTDLNIADPLTKPLPQPKHEAH 1306

Query: 1714 LEKMSMRYHGD 1746
               M +RY  D
Sbjct: 1307 TRAMGIRYLHD 1317



 Score =  126 bits (317), Expect(2) = e-170
 Identities = 59/77 (76%), Positives = 65/77 (84%)
 Frame = +2

Query: 392  VSPPEGIKPIGCKWVFKRKTGADGKVETYKARLVAKGFKQRQGVDYDETFSPVAMLKSIR 571
            V PP+G+K I CKW+FK+K   DG V  YKARLVAKGFKQ QGVDYDETFSPVAMLKSIR
Sbjct: 830  VDPPDGVKTIECKWLFKKKADMDGNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIR 889

Query: 572  ILLAIATYHNYEIWQMD 622
            I+LAIA Y +YEIWQMD
Sbjct: 890  IILAIAAYFDYEIWQMD 906


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  489 bits (1258), Expect(2) = e-164
 Identities = 242/368 (65%), Positives = 293/368 (79%), Gaps = 5/368 (1%)
 Frame = +1

Query: 649  LKQASRRWNIRFDETIKEFNFIKNEDEPCVYKEVSGNAVSFLILYVDDILLIGNDILMLQ 828
            LKQASR WN+RF+E IKEF+FI+NE+EPCVYK+ SG+AV+FL+LYVDDILL+GNDI +LQ
Sbjct: 594  LKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQ 653

Query: 829  SIKIWLSKHFSMKDLGEASHILGIKIYRDRSKRMFDLSQGTYIDSMLKRFSMEDSKRGLM 1008
            S+K WL   FSMKD+GEA++ILGI+IYRDR  ++  LSQ TYID +L RF+M DSK+G +
Sbjct: 654  SVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFI 713

Query: 1009 PMSHGIHFSKKQAPKTPDERDRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNP 1188
            PMSHGI  SK Q P T DER+RMSKIPYASAIGSIMY M+ TRPDVA ALS+TSRYQS+P
Sbjct: 714  PMSHGITLSKTQCPSTHDERERMSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQSDP 773

Query: 1189 GEEHWKAVKNILKYL*RTKDMFLVYGGS-ELKLESFTDLSFQTDQNDSKSVSRYVLTLNG 1365
            GE HW  V+NI KYL RTKD FLVYGGS EL +  +TD SFQTD++D +S S +   LNG
Sbjct: 774  GESHWIVVRNIFKYLRRTKDKFLVYGGSEELVVSGYTDASFQTDKDDFRSQSGFFFCLNG 833

Query: 1366 GAVSWKSSKQQTVADSVTETEYI----AAKEAVWMKKFITELDVVPNIRGPVPLFCDNIR 1533
            GAVSWKS+KQ TVADS TE EYI    AAKE VW++KFITEL VVP+I GP+ L+CDN  
Sbjct: 834  GAVSWKSTKQSTVADSTTEAEYIAASEAAKEVVWIRKFITELGVVPSISGPIDLYCDNNG 893

Query: 1534 AVAQVKESMSHQKSKHVLRRFHLIREIIERGDVTLERVDSQDNIADPFTKVLTQQQFDRH 1713
            A+AQ KE  SHQKSKH+ RR+HLIREII+RGDV + RV +  N+AD FTK L Q + + H
Sbjct: 894  AIAQAKEPKSHQKSKHIQRRYHLIREIIDRGDVKISRVSTDANVADHFTKPLPQPKHESH 953

Query: 1714 LEKMSMRY 1737
               + +R+
Sbjct: 954  TTAIGIRF 961



 Score =  117 bits (293), Expect(2) = e-164
 Identities = 52/77 (67%), Positives = 64/77 (83%)
 Frame = +2

Query: 392 VSPPEGIKPIGCKWVFKRKTGADGKVETYKARLVAKGFKQRQGVDYDETFSPVAMLKSIR 571
           V  P+G+KPI CKW+FK+K   DG ++ YKA LVAKG+KQ  G+DYDET+SPVAMLKSIR
Sbjct: 477 VDLPDGVKPIECKWIFKKKIDMDGNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIR 536

Query: 572 ILLAIATYHNYEIWQMD 622
           ILLA A +++YEIWQMD
Sbjct: 537 ILLATAAHYDYEIWQMD 553


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  480 bits (1235), Expect(2) = e-160
 Identities = 239/371 (64%), Positives = 292/371 (78%), Gaps = 5/371 (1%)
 Frame = +1

Query: 649  LKQASRRWNIRFDETIKEFNFIKNEDEPCVYKEVSGNAVSFLILYVDDILLIGNDILMLQ 828
            LKQASR WNIRFDE IK F F+KN++EPCVY +VSG+ +  LILYVDDILLIGNDI ML+
Sbjct: 943  LKQASRSWNIRFDEEIKRFGFVKNKEEPCVYMKVSGSTLVILILYVDDILLIGNDIPMLE 1002

Query: 829  SIKIWLSKHFSMKDLGEASHILGIKIYRDRSKRMFDLSQGTYIDSMLKRFSMEDSKRGLM 1008
            S+K  L   FSMKDLGEA++ILGIKIYRDRS+R+  LSQ TYID +L RF+M+++K+G +
Sbjct: 1003 SVKASLKNSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYIDKVLIRFNMQNTKKGFL 1062

Query: 1009 PMSHGIHFSKKQAPKTPDERDRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNP 1188
            PMSHGI  SK Q P T DERDRM+ IPYASAIGSIMY MICTR DV++ALSVTSRYQ++P
Sbjct: 1063 PMSHGISPSKSQRPSTTDERDRMNGIPYASAIGSIMYAMICTRQDVSYALSVTSRYQADP 1122

Query: 1189 GEEHWKAVKNILKYL*RTKDMFLVYGG-SELKLESFTDLSFQTDQNDSKSVSRYVLTLNG 1365
            GE HW AVKNILKYL RTKD FL+YGG  EL +  +TD SFQTD++D +S S +V  LNG
Sbjct: 1123 GECHWTAVKNILKYLRRTKDAFLIYGGDEELVVNGYTDASFQTDKDDYRSQSGFVFILNG 1182

Query: 1366 GAVSWKSSKQQTVADSVTETEYI----AAKEAVWMKKFITELDVVPNIRGPVPLFCDNIR 1533
            GAVSWKSSKQ+TVADS T+ EYI    AAKE VW++ FI EL VVP+   P+ L+CDN  
Sbjct: 1183 GAVSWKSSKQETVADSTTKAEYIAASEAAKEGVWIRNFIAELGVVPSASSPMDLYCDNNG 1242

Query: 1534 AVAQVKESMSHQKSKHVLRRFHLIREIIERGDVTLERVDSQDNIADPFTKVLTQQQFDRH 1713
            A+AQ KE  SHQKSKH+LRR+HLIRE+++RGDV + ++ +  N+ADP TK LTQ + + H
Sbjct: 1243 AIAQAKEPRSHQKSKHILRRYHLIRELVDRGDVKICKIHTDLNVADPLTKPLTQPKHEAH 1302

Query: 1714 LEKMSMRYHGD 1746
               + +RY  D
Sbjct: 1303 TRAIGIRYLND 1313



 Score =  115 bits (287), Expect(2) = e-160
 Identities = 54/77 (70%), Positives = 63/77 (81%)
 Frame = +2

Query: 392  VSPPEGIKPIGCKWVFKRKTGADGKVETYKARLVAKGFKQRQGVDYDETFSPVAMLKSIR 571
            V P +G+K I CKW++K+K   DG V  +KARLVAKGF+Q QGVDYDETFS VAMLKSIR
Sbjct: 826  VDPLDGVKTIECKWIYKKKIDMDGNVHIHKARLVAKGFRQVQGVDYDETFSLVAMLKSIR 885

Query: 572  ILLAIATYHNYEIWQMD 622
            I+LAIA Y +YEIWQMD
Sbjct: 886  IILAIAAYFDYEIWQMD 902


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  470 bits (1209), Expect(2) = e-160
 Identities = 234/352 (66%), Positives = 284/352 (80%), Gaps = 5/352 (1%)
 Frame = +1

Query: 649  LKQASRRWNIRFDETIKEFNFIKNEDEPCVYKEVSGNAVSFLILYVDDILLIGNDILMLQ 828
            LKQASR WNIRFDE +K   F+KNE+EPCVYK++SG+A+ FLILYVDDILLIGNDI ML+
Sbjct: 896  LKQASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLE 955

Query: 829  SIKIWLSKHFSMKDLGEASHILGIKIYRDRSKRMFDLSQGTYIDSMLKRFSMEDSKRGLM 1008
            S+K  L   FSMKDLGEA++ILGI+IYRDRSKR+  LSQ TYID +LKRF+M+DSK+G +
Sbjct: 956  SVKTSLKYSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFL 1015

Query: 1009 PMSHGIHFSKKQAPKTPDERDRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNP 1188
            PMSHGI+  K Q P+T DER++MS IPYASAIGSIMY M+CTR DV++ALS TSRYQS+ 
Sbjct: 1016 PMSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQSDL 1075

Query: 1189 GEEHWKAVKNILKYL*RTKDMFLVYG-GSELKLESFTDLSFQTDQNDSKSVSRYVLTLNG 1365
            GE HW AVKNILKYL RTKDMFLVYG   EL +  +TD SFQTD++D +S S +V  LNG
Sbjct: 1076 GESHWIAVKNILKYLRRTKDMFLVYGRQEELVVNGYTDASFQTDKDDFRSQSGFVFCLNG 1135

Query: 1366 GAVSWKSSKQQTVADSVTETEYI----AAKEAVWMKKFITELDVVPNIRGPVPLFCDNIR 1533
            GAVSWKSSKQ TVADS TE EYI    AAKEAVW+KKF+++L V+ +   P+ L+CDN  
Sbjct: 1136 GAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSPMDLYCDNSG 1195

Query: 1534 AVAQVKESMSHQKSKHVLRRFHLIREIIERGDVTLERVDSQDNIADPFTKVL 1689
            A+AQ KE  SHQKSKH+LRR+HLIRE++ RGDV + ++ +  N+ADP TK L
Sbjct: 1196 AIAQAKEPRSHQKSKHILRRYHLIREMVGRGDVKICKIHTDLNVADPLTKPL 1247



 Score =  124 bits (312), Expect(2) = e-160
 Identities = 60/89 (67%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
 Frame = +2

Query: 359  LEFRDANNIIN-VSPPEGIKPIGCKWVFKRKTGADGKVETYKARLVAKGFKQRQGVDYDE 535
            +E    N + N V PP+G+K I CKW+FK+ T  DG V  Y ARLVAKGF+Q QGVDYDE
Sbjct: 767  IESMHVNQVWNLVDPPDGVKAIECKWIFKKMTDVDGTVHIYNARLVAKGFRQIQGVDYDE 826

Query: 536  TFSPVAMLKSIRILLAIATYHNYEIWQMD 622
            TFSPVAMLKSIRI+LAIA Y +YEIWQMD
Sbjct: 827  TFSPVAMLKSIRIVLAIAAYFDYEIWQMD 855


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  470 bits (1209), Expect(2) = e-160
 Identities = 234/352 (66%), Positives = 284/352 (80%), Gaps = 5/352 (1%)
 Frame = +1

Query: 649  LKQASRRWNIRFDETIKEFNFIKNEDEPCVYKEVSGNAVSFLILYVDDILLIGNDILMLQ 828
            LKQASR WNIRFDE +K   F+KNE+EPCVYK++SG+A+ FLILYVDDILLIGNDI ML+
Sbjct: 809  LKQASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLE 868

Query: 829  SIKIWLSKHFSMKDLGEASHILGIKIYRDRSKRMFDLSQGTYIDSMLKRFSMEDSKRGLM 1008
            S+K  L   FSMKDLGEA++ILGI+IYRDRSKR+  LSQ TYID +LKRF+M+DSK+G +
Sbjct: 869  SVKTSLKYSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFL 928

Query: 1009 PMSHGIHFSKKQAPKTPDERDRMSKIPYASAIGSIMYGMICTRPDVAHALSVTSRYQSNP 1188
            PMSHGI+  K Q P+T DER++MS IPYASAIGSIMY M+CTR DV++ALS TSRYQS+ 
Sbjct: 929  PMSHGINLGKNQCPQTTDERNKMSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQSDL 988

Query: 1189 GEEHWKAVKNILKYL*RTKDMFLVYG-GSELKLESFTDLSFQTDQNDSKSVSRYVLTLNG 1365
            GE HW AVKNILKYL RTKDMFLVYG   EL +  +TD SFQTD++D +S S +V  LNG
Sbjct: 989  GESHWIAVKNILKYLRRTKDMFLVYGRQEELVVNGYTDASFQTDKDDFRSQSGFVFCLNG 1048

Query: 1366 GAVSWKSSKQQTVADSVTETEYI----AAKEAVWMKKFITELDVVPNIRGPVPLFCDNIR 1533
            GAVSWKSSKQ TVADS TE EYI    AAKEAVW+KKF+++L V+ +   P+ L+CDN  
Sbjct: 1049 GAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSPMDLYCDNSG 1108

Query: 1534 AVAQVKESMSHQKSKHVLRRFHLIREIIERGDVTLERVDSQDNIADPFTKVL 1689
            A+AQ KE  SHQKSKH+LRR+HLIRE++ RGDV + ++ +  N+ADP TK L
Sbjct: 1109 AIAQAKEPRSHQKSKHILRRYHLIREMVGRGDVKICKIHTDLNVADPLTKPL 1160



 Score =  124 bits (312), Expect(2) = e-160
 Identities = 60/89 (67%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
 Frame = +2

Query: 359 LEFRDANNIIN-VSPPEGIKPIGCKWVFKRKTGADGKVETYKARLVAKGFKQRQGVDYDE 535
           +E    N + N V PP+G+K I CKW+FK+ T  DG V  Y ARLVAKGF+Q QGVDYDE
Sbjct: 680 IESMHVNQVWNLVDPPDGVKAIECKWIFKKMTDVDGTVHIYNARLVAKGFRQIQGVDYDE 739

Query: 536 TFSPVAMLKSIRILLAIATYHNYEIWQMD 622
           TFSPVAMLKSIRI+LAIA Y +YEIWQMD
Sbjct: 740 TFSPVAMLKSIRIVLAIAAYFDYEIWQMD 768