BLASTX nr result
ID: Panax21_contig00020589
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00020589
(1058 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu... 187 7e-50
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 183 5e-47
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 174 1e-44
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 173 3e-44
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 173 3e-44
>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 867
Score = 187 bits (476), Expect(2) = 7e-50
Identities = 105/248 (42%), Positives = 148/248 (59%), Gaps = 2/248 (0%)
Frame = +1
Query: 319 RGRGPNQKKYSGKERERSQSRPGKKDKSQVECYHCHEKGHYKNQCPLLXXXXXXXXXQIE 498
RGR +Q K + +S+ R KD EC CHEKGH+K CP L ++
Sbjct: 145 RGRQQSQTK-ERRGMSKSKGRAVAKD----ECAFCHEKGHWKKDCPKLQKKE-----KVL 194
Query: 499 NSANVAE-QADVCSDGELYTVTENEASQGDLLSVRDSGSLTDWYMDSGCSFHMSPHRDWF 675
ANVAE ++DV SD L ++S+ S L +W +DSGC++HM P RDWF
Sbjct: 195 QDANVAECKSDVESDISL------------IVSLSASLYLDEWILDSGCTYHMCPIRDWF 242
Query: 676 DTFTSCNGGTVLLGNNAVCKVTGIGTIKIKMFDGVVRTLGDVRYIPELKKSLLSVGVLDS 855
F +GG V +GN+ CK GIG+IK++ DG R L DVRY+P+LKK+L+S+G L+S
Sbjct: 243 FEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALES 302
Query: 856 IGCSISVRDGVMKITKGSMVIMKGQKKGTLYKLIGDTVAGG-AAISVQDNSNSDSTELWH 1032
G +++RDG++K T G++V++KG K LY G TV G AA + ++++T+LWH
Sbjct: 303 KGLVVTMRDGILKATSGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEATKLWH 362
Query: 1033 MRLGHLSE 1056
MRLGH E
Sbjct: 363 MRLGHAGE 370
Score = 37.0 bits (84), Expect(2) = 7e-50
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 7/47 (14%)
Frame = +2
Query: 89 SLPDSYSTLQTTLLVGKEKLAVDDVMSAVL-------DQDKFKGTTS 208
SLPD + L+TTLL GKE +++D V SA+ D+ K K TTS
Sbjct: 92 SLPDEFEHLETTLLHGKENVSLDVVCSALYSHELRKQDKMKTKSTTS 138
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 183 bits (464), Expect(2) = 5e-47
Identities = 102/263 (38%), Positives = 138/263 (52%), Gaps = 6/263 (2%)
Frame = +1
Query: 286 QGDSLLTFSNGRGRGPNQKKYSGKERERSQSRPGKKDKSQVECYHCHEKGHYKNQCPLLX 465
QG +N + R + Y G+ + R + + C +C GH ++C L
Sbjct: 188 QGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYK---------SCKYCKRDGHDISKCWKLQ 238
Query: 466 XXXXXXXXQI-----ENSANVAEQADVCSDGELYTVTENEASQGDLLSVRDSGSLTDWYM 630
I E+ A D SD EL A D W +
Sbjct: 239 DKDKRTGKYIPKGKKEDEGKAAVVTDEKSDAELLVAYAGCAQTSD-----------QWIL 287
Query: 631 DSGCSFHMSPHRDWFDTFTSCNGGTVLLGNNAVCKVTGIGTIKIKMFDGVVRTLGDVRYI 810
D+ C++HM P+RDWF T+ GGTVL+G++ C+V GIGT++IKMFDG +RTL DVR+I
Sbjct: 288 DTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHI 347
Query: 811 PELKKSLLSVGVLDSIGCSISVRDGVMKITKGSMVIMKGQ-KKGTLYKLIGDTVAGGAAI 987
P LK+SL+S+ LD G S DG++K+TKGS+V+MK K LY L G T+ G A
Sbjct: 348 PNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVAT 407
Query: 988 SVQDNSNSDSTELWHMRLGHLSE 1056
SNSD+T LWHMRLGH+SE
Sbjct: 408 VSDSLSNSDATNLWHMRLGHMSE 430
Score = 32.0 bits (71), Expect(2) = 5e-47
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +2
Query: 2 INEFNRLVTQLTSIDXXXXXXXXXXXXXXSLPDSYSTLQTTLLVGKEKLAVDDVMSAVLD 181
++ F +V L S++ SLP SY+ + T+L ++ L + +V A+
Sbjct: 106 LSVFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHA 165
Query: 182 QDKFK 196
++K K
Sbjct: 166 KEKMK 170
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 174 bits (441), Expect(2) = 1e-44
Identities = 97/256 (37%), Positives = 145/256 (56%), Gaps = 4/256 (1%)
Frame = +1
Query: 301 LTFSNGRG--RGPNQKKYSGKERERSQSRPGKKDKSQVECYHCHEKGHYKNQCPLLXXXX 474
LT + GR RGP+ + G+ + R K ++CY C KGH K +C +
Sbjct: 199 LTMTRGRSTERGPSGSQNHGRSKSRR--------KKNIKCYGCGMKGHVKKECWNIKKNG 250
Query: 475 XXXXXQIENSANVAEQADVCSDGELYTVTENEASQGDLLSVRDSGSLTD-WYMDSGCSFH 651
+ VA +D DGE+ +S+G+ L D W MDSG ++H
Sbjct: 251 EKNSEASTSQGCVASTSD---DGEILYSEAATSSKGER-------RLNDVWIMDSGATWH 300
Query: 652 MSPHRDWFDTFTSCNGGTVLLGNNAVCKVTGIGTIKIKMFDGVVRTLGDVRYIPELKKSL 831
M+PHRDWF ++ + G+V +GN+ ++ G+GTI++KM DG VR + VR++ LKK+L
Sbjct: 301 MTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNL 360
Query: 832 LSVGVLDSIGCSISVRDGVMKITKGSMVIMKGQK-KGTLYKLIGDTVAGGAAISVQDNSN 1008
LSVG LD +GC I G++K+ KG++V+MK +K LY L+GDT+ A SV +S
Sbjct: 361 LSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADA-SVAASSQ 419
Query: 1009 SDSTELWHMRLGHLSE 1056
++T +WH RLGH+SE
Sbjct: 420 EETTMMWHQRLGHMSE 435
Score = 32.7 bits (73), Expect(2) = 1e-44
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 2 INEFNRLVTQLTSIDXXXXXXXXXXXXXXSLPDSYSTLQTTLLVGK--EKLAVDDVMSAV 175
IN N L +QLT+ D SLPDSY L + + L DDV A+
Sbjct: 117 INTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNITDTLHFDDVAGAI 176
Query: 176 LDQD 187
L+++
Sbjct: 177 LEEE 180
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 173 bits (438), Expect(2) = 3e-44
Identities = 97/256 (37%), Positives = 144/256 (56%), Gaps = 4/256 (1%)
Frame = +1
Query: 301 LTFSNGRG--RGPNQKKYSGKERERSQSRPGKKDKSQVECYHCHEKGHYKNQCPLLXXXX 474
LT + GR RGP+ + G+ + R K ++CY C KGH K +C +
Sbjct: 199 LTMTRGRSTERGPSGSQNHGRSKSRR--------KKNIKCYGCGMKGHVKKECWNIKKNG 250
Query: 475 XXXXXQIENSANVAEQADVCSDGELYTVTENEASQGDLLSVRDSGSLTD-WYMDSGCSFH 651
+ VA +D DGE+ +S+G+ L D W MDSG ++H
Sbjct: 251 EKNSEASTSQGCVASTSD---DGEILYSEAATSSKGER-------RLNDVWIMDSGATWH 300
Query: 652 MSPHRDWFDTFTSCNGGTVLLGNNAVCKVTGIGTIKIKMFDGVVRTLGDVRYIPELKKSL 831
M+PHRDWF ++ + G+V +GN+ ++ G+GTI++KM DG VR + VR++ LKK+L
Sbjct: 301 MTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNL 360
Query: 832 LSVGVLDSIGCSISVRDGVMKITKGSMVIMKGQK-KGTLYKLIGDTVAGGAAISVQDNSN 1008
LSVG LD +GC I G++K+ KG++V+MK +K LY L+GDT+ A SV S
Sbjct: 361 LSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADA-SVAAASQ 419
Query: 1009 SDSTELWHMRLGHLSE 1056
++T +WH RLGH+SE
Sbjct: 420 EETTMMWHQRLGHMSE 435
Score = 32.7 bits (73), Expect(2) = 3e-44
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 2 INEFNRLVTQLTSIDXXXXXXXXXXXXXXSLPDSYSTLQTTLLVGK--EKLAVDDVMSAV 175
IN N L +QLT+ D SLPDSY L + + L DDV A+
Sbjct: 117 INTLNTLFSQLTASDFKIAKNERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAI 176
Query: 176 LDQD 187
L+++
Sbjct: 177 LEEE 180
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 173 bits (438), Expect(2) = 3e-44
Identities = 97/256 (37%), Positives = 144/256 (56%), Gaps = 4/256 (1%)
Frame = +1
Query: 301 LTFSNGRG--RGPNQKKYSGKERERSQSRPGKKDKSQVECYHCHEKGHYKNQCPLLXXXX 474
LT + GR RGP+ + G+ + R K ++CY C KGH K +C +
Sbjct: 199 LTMTRGRSTERGPSGSQNHGRSKSRR--------KKNIKCYGCGMKGHVKKECWNIKKNG 250
Query: 475 XXXXXQIENSANVAEQADVCSDGELYTVTENEASQGDLLSVRDSGSLTD-WYMDSGCSFH 651
+ VA +D DGE+ +S+G+ L D W MDSG ++H
Sbjct: 251 EKNSEASTSQGCVASTSD---DGEILYSEAATSSKGER-------RLNDVWIMDSGATWH 300
Query: 652 MSPHRDWFDTFTSCNGGTVLLGNNAVCKVTGIGTIKIKMFDGVVRTLGDVRYIPELKKSL 831
M+PHRDWF ++ + G+V +GN+ ++ G+GTI++KM DG VR + VR++ LKK+L
Sbjct: 301 MTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNL 360
Query: 832 LSVGVLDSIGCSISVRDGVMKITKGSMVIMKGQK-KGTLYKLIGDTVAGGAAISVQDNSN 1008
LSVG LD +GC I G++K+ KG++V+MK +K LY L+GDT+ A SV S
Sbjct: 361 LSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADA-SVAAASQ 419
Query: 1009 SDSTELWHMRLGHLSE 1056
++T +WH RLGH+SE
Sbjct: 420 EETTMMWHQRLGHMSE 435
Score = 32.7 bits (73), Expect(2) = 3e-44
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 2 INEFNRLVTQLTSIDXXXXXXXXXXXXXXSLPDSYSTLQTTLLVGK--EKLAVDDVMSAV 175
IN N L +QLT+ D SLPDSY L + + L DDV A+
Sbjct: 117 INTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAI 176
Query: 176 LDQD 187
L+++
Sbjct: 177 LEEE 180