BLASTX nr result

ID: Panax21_contig00020580 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00020580
         (1181 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004146126.1| PREDICTED: uncharacterized protein LOC101212...   257   4e-66
ref|XP_002273919.1| PREDICTED: 60S ribosomal protein L24, mitoch...   241   3e-61
emb|CAN79404.1| hypothetical protein VITISV_028074 [Vitis vinifera]   241   3e-61
ref|XP_002324390.1| predicted protein [Populus trichocarpa] gi|2...   235   1e-59
ref|XP_002867301.1| ribosomal protein L28 family protein [Arabid...   229   1e-57

>ref|XP_004146126.1| PREDICTED: uncharacterized protein LOC101212331 [Cucumis sativus]
           gi|449528875|ref|XP_004171427.1| PREDICTED:
           uncharacterized LOC101212331 [Cucumis sativus]
          Length = 221

 Score =  257 bits (657), Expect = 4e-66
 Identities = 128/185 (69%), Positives = 145/185 (78%)
 Frame = -1

Query: 905 NLAPGVNESLQKSIPNSKVVMGRAHRGLFAGRHIQFGNNVSEKGGNTTRRCWKPNVQEKR 726
           NLAPGV +SL+K IP+SK+VMGRA+RG++AGRHI+FGN VSE GGN +RR WKPNVQEKR
Sbjct: 20  NLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVSEDGGNKSRRNWKPNVQEKR 79

Query: 725 LFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLFWKSKIEKMYAELG 546
           LFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTE+GLFWKSKIE +Y ELG
Sbjct: 80  LFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTELGLFWKSKIETLYEELG 139

Query: 545 EMEVVFFSPEDXXXXXXXXXXXXXXXXAHRRDAERMMCGSSPNSEKIKEVGPDNEGSEDD 366
           +MEVVFFSPED                A RR+A R M GSS    +IKE G    GS ++
Sbjct: 140 KMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSSAKLNQIKEGGEKGNGSSEE 199

Query: 365 LVANS 351
             A+S
Sbjct: 200 AAASS 204


>ref|XP_002273919.1| PREDICTED: 60S ribosomal protein L24, mitochondrial [Vitis
           vinifera] gi|302142683|emb|CBI19886.3| unnamed protein
           product [Vitis vinifera]
          Length = 216

 Score =  241 bits (615), Expect = 3e-61
 Identities = 120/168 (71%), Positives = 133/168 (79%)
 Frame = -1

Query: 890 VNESLQKSIPNSKVVMGRAHRGLFAGRHIQFGNNVSEKGGNTTRRCWKPNVQEKRLFSYI 711
           + ESL+K +P+SKVVMGRA RG++AGRHIQFGN VSE GGN TRR WKPNVQEKRLFSYI
Sbjct: 21  LEESLKKYVPDSKVVMGRAKRGIYAGRHIQFGNRVSEDGGNKTRRSWKPNVQEKRLFSYI 80

Query: 710 LDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLFWKSKIEKMYAELGEMEVV 531
           LDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLFWK+KIEKMY ELGEM+VV
Sbjct: 81  LDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLFWKAKIEKMYEELGEMDVV 140

Query: 530 FFSPEDXXXXXXXXXXXXXXXXAHRRDAERMMCGSSPNSEKIKEVGPD 387
           FFSPED                A RR+A R + G S    +++E G D
Sbjct: 141 FFSPEDEVKFEQGFKELKLAERAARREARRHIYGGSGKQVQLEEGGAD 188


>emb|CAN79404.1| hypothetical protein VITISV_028074 [Vitis vinifera]
          Length = 1084

 Score =  241 bits (615), Expect = 3e-61
 Identities = 120/168 (71%), Positives = 133/168 (79%)
 Frame = -1

Query: 890 VNESLQKSIPNSKVVMGRAHRGLFAGRHIQFGNNVSEKGGNTTRRCWKPNVQEKRLFSYI 711
           + ESL+K +P+SKVVMGRA RG++AGRHIQFGN VSE GGN TRR WKPNVQEKRLFSYI
Sbjct: 21  LEESLKKYVPDSKVVMGRAKRGIYAGRHIQFGNRVSEDGGNKTRRSWKPNVQEKRLFSYI 80

Query: 710 LDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLFWKSKIEKMYAELGEMEVV 531
           LDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLFWK+KIEKMY ELGEM+VV
Sbjct: 81  LDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLFWKAKIEKMYEELGEMDVV 140

Query: 530 FFSPEDXXXXXXXXXXXXXXXXAHRRDAERMMCGSSPNSEKIKEVGPD 387
           FFSPED                A RR+A R + G S    +++E G D
Sbjct: 141 FFSPEDEVKFEQGFKELKLAERAARREARRHIYGGSGKQVQLEEGGAD 188


>ref|XP_002324390.1| predicted protein [Populus trichocarpa] gi|222865824|gb|EEF02955.1|
           predicted protein [Populus trichocarpa]
          Length = 177

 Score =  235 bits (600), Expect = 1e-59
 Identities = 113/150 (75%), Positives = 125/150 (83%)
 Frame = -1

Query: 965 MAFRSXXXXXXXXXXXXXXKNLAPGVNESLQKSIPNSKVVMGRAHRGLFAGRHIQFGNNV 786
           MAFR               KNLAPGV E+L+K+IPNSKVVM RA RGLFAGRHIQFGN +
Sbjct: 1   MAFRGKEMMKKIMSKIGGEKNLAPGVKEALKKAIPNSKVVMNRAKRGLFAGRHIQFGNQI 60

Query: 785 SEKGGNTTRRCWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 606
           SE GGN +RR WKPNVQ+KRLFSYILDRH+RVKVTTHA+RCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKSRRSWKPNVQDKRLFSYILDRHVRVKVTTHAIRCIDKAGGIDEYLLKTPYHKM 120

Query: 605 DTEMGLFWKSKIEKMYAELGEMEVVFFSPE 516
           DTEMG+ WK+KIEK+Y ELG MEVVFF+PE
Sbjct: 121 DTEMGILWKAKIEKLYEELGNMEVVFFTPE 150


>ref|XP_002867301.1| ribosomal protein L28 family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297313137|gb|EFH43560.1| ribosomal protein
           L28 family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 212

 Score =  229 bits (583), Expect = 1e-57
 Identities = 113/185 (61%), Positives = 130/185 (70%), Gaps = 5/185 (2%)
 Frame = -1

Query: 905 NLAPGVNESLQKSIPNSKVVMGRAHRGLFAGRHIQFGNNVSEKGGNTTRRCWKPNVQEKR 726
           N+ P + E L+  +P++KVVMGRA RGL+AGRHIQ+GN VSE GGN +RRCWKPNVQEKR
Sbjct: 20  NITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVSEDGGNKSRRCWKPNVQEKR 79

Query: 725 LFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLFWKSKIEKMYAELG 546
           LFSYI DRHI+VKVTTHALRCIDKAGGIDEYLLKTPY KMDTEMGL+WK+K+E+ YAELG
Sbjct: 80  LFSYIFDRHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMDTEMGLYWKTKVEQRYAELG 139

Query: 545 EMEVVFFSPEDXXXXXXXXXXXXXXXXAHRRDAERMMCGSSPNSEKIKEV-----GPDNE 381
           +MEV FF+PED                  RR+A R M G      K  E      G    
Sbjct: 140 QMEVAFFTPEDEAKFEQGFKDLNIAKKDARREARRKMYGKKGGEGKADEEASIEGGGSKS 199

Query: 380 GSEDD 366
             EDD
Sbjct: 200 HQEDD 204


Top