BLASTX nr result

ID: Panax21_contig00020489 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00020489
         (754 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277913.1| PREDICTED: zinc finger CCCH domain-containin...   190   2e-46
ref|XP_002510504.1| nucleic acid binding protein, putative [Rici...   170   3e-40
ref|XP_002301991.1| predicted protein [Populus trichocarpa] gi|2...   158   1e-36
gb|AAO14624.2|AF467900_1 hypothetical protein [Prunus persica]        156   5e-36
ref|XP_002306911.1| predicted protein [Populus trichocarpa] gi|2...   154   2e-35

>ref|XP_002277913.1| PREDICTED: zinc finger CCCH domain-containing protein 6-like [Vitis
           vinifera]
          Length = 457

 Score =  190 bits (483), Expect = 2e-46
 Identities = 114/252 (45%), Positives = 144/252 (57%), Gaps = 2/252 (0%)
 Frame = +3

Query: 3   REMRVLEAVYPRPSAIPPNPSMLISVDDSYDNDQHTHLIPITPIEDDDASVDTLFDNVPS 182
           REMRVLEAVYPRPSAIPPNPS+ I  +D  ++DQ   LIPI P+ED++A+++   D V  
Sbjct: 117 REMRVLEAVYPRPSAIPPNPSVSIDGEDMDNDDQKILLIPIVPVEDEEAALEMSADTVAP 176

Query: 183 NTAPMSLSAQLSSPGIPAFQXXXXXXXXXXXXFVAPAATAL-GVEPDIVTAAYTALSAVM 359
              PMS  + L  PGIP+                  AA  + GVEPD+V AA  A +AVM
Sbjct: 177 INIPMSSQSLLLPPGIPSASSSNAPNIPNPPANENVAAGMVPGVEPDVVAAASAAFTAVM 236

Query: 360 ATNDQGNLIDPDLLVKILRDPQLMEKLGSSHGARIS-PQIMPKPRLQGITLPDPPLAHIN 536
            +N+QGNLID DLL+KIL +P+++E++ +      S PQ +P  RL  I L D P  H++
Sbjct: 237 RSNEQGNLIDHDLLIKILSNPKIIERIVTDQVVSSSNPQAVPNQRLPPIALSDQPPGHVS 296

Query: 537 RSEAVASSSAATPCRPFYPPAGREGPIPNLRXXXXXXXXXXXXXXXXXXXXXXXKDINYY 716
           R E     SAA P  PFY  +   GP+P  R                       KDINYY
Sbjct: 297 RVETNIPLSAAIPSGPFYSQSNGPGPVPAPR----PPPSMVGPSSSSPPVRPVTKDINYY 352

Query: 717 KSLIQQHGGERQ 752
           KSLIQQHGGERQ
Sbjct: 353 KSLIQQHGGERQ 364


>ref|XP_002510504.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223551205|gb|EEF52691.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 461

 Score =  170 bits (430), Expect = 3e-40
 Identities = 112/265 (42%), Positives = 139/265 (52%), Gaps = 15/265 (5%)
 Frame = +3

Query: 3   REMRVLEAVYPRPSAIPPNPSMLISVDDSYDNDQHTHLIPITPIEDDDASVDTLFDNVPS 182
           REMRVLEAVYPRPSAIPPNP+    V+D    D     IPITPIED+DA+ D   D    
Sbjct: 123 REMRVLEAVYPRPSAIPPNPAFPAEVEDFRQGDHQVPQIPITPIEDEDAT-DATSDFRGP 181

Query: 183 NTAPMSLSAQLSSPGIPAFQXXXXXXXXXXXXFVAPAATALGVEPDIVTAAYTALSAVMA 362
              P+S  + L +P +P                VA      GVEPD+V AA  A +AV  
Sbjct: 182 QIVPVSSQSHLLAP-LPQRSIPSISNTRINEKPVAGVLPVPGVEPDVVAAASAAFAAVNK 240

Query: 363 TNDQGNLIDPDLLVKILRDPQLMEKLGSSHGARISPQIMPKPRLQGITLPDPP------- 521
           +N+QG+LID DLL+KIL +P+L+EKL   +GA  + Q +PKP    + L DPP       
Sbjct: 241 SNEQGSLIDHDLLIKILNNPKLIEKLVQDYGAASNGQNVPKPAPSFVPLSDPPPPPPPVS 300

Query: 522 -----LAHINRSEA-VASSSAATPCRPFYPPAGREGP--IPNLRXXXXXXXXXXXXXXXX 677
                  H+NR+E    SS AAT   PFY      GP  +PN +                
Sbjct: 301 LSDPSYMHMNRTEMNTTSSFAATSSGPFYAQPNGAGPGYLPNAQ-------VPPPAVPAS 353

Query: 678 XXXXXXXKDINYYKSLIQQHGGERQ 752
                  KD+NYYK+LIQQHGGERQ
Sbjct: 354 SVGVPQVKDMNYYKNLIQQHGGERQ 378


>ref|XP_002301991.1| predicted protein [Populus trichocarpa] gi|222843717|gb|EEE81264.1|
           predicted protein [Populus trichocarpa]
          Length = 425

 Score =  158 bits (400), Expect = 1e-36
 Identities = 107/258 (41%), Positives = 142/258 (55%), Gaps = 8/258 (3%)
 Frame = +3

Query: 3   REMRVLEAVYPRPSAIPPNPSMLISVDDSYDNDQHTHLIPITPIEDDDASVDTLFDNVPS 182
           REMRVLEAVYPRPSAIPPN +  + ++ S   D    LIPITPIED+DA+ +   D +  
Sbjct: 104 REMRVLEAVYPRPSAIPPNSTFSVDLESSQHGDHQIPLIPITPIEDEDAT-EAPSDVMGP 162

Query: 183 NTAPMSLSAQLSSPGIPAFQXXXXXXXXXXXXFVAPAATAL-GVEPDIVTAAYTALSAVM 359
           +  PM+  AQL + G P+FQ               P A  L GVEPD       A++AV 
Sbjct: 163 SMVPMNSQAQLLASGFPSFQNGIPSFPNG-----KPTAGVLPGVEPD-------AMAAVN 210

Query: 360 ATNDQGNLIDPDLLVKILRDPQLMEKLGSSHGARISPQIMPK-----PRLQGITLPDPPL 524
            +++QG+LIDPDLL+KIL +P+L+EKL + HGA  + Q +P      P    +TLP P  
Sbjct: 211 KSSEQGSLIDPDLLLKILSNPKLIEKLVTDHGAVANAQNIPNTPLSDPLTSHVTLPKPAH 270

Query: 525 AHINRSEAVASSS-AATPCRPFY-PPAGREGPIPNLRXXXXXXXXXXXXXXXXXXXXXXX 698
             +NR+E+ A +S  AT    FY  P G    +P+                         
Sbjct: 271 IQMNRTESSAQASLTATSSGSFYTQPNGVPMGVPS------SARIPPPGVPSTPTGATQA 324

Query: 699 KDINYYKSLIQQHGGERQ 752
           KDINYYK+LIQQHGG++Q
Sbjct: 325 KDINYYKNLIQQHGGDKQ 342


>gb|AAO14624.2|AF467900_1 hypothetical protein [Prunus persica]
          Length = 441

 Score =  156 bits (394), Expect = 5e-36
 Identities = 105/253 (41%), Positives = 136/253 (53%), Gaps = 4/253 (1%)
 Frame = +3

Query: 3   REMRVLEAVYPRPSAIPPNPSMLISVDDSYDNDQHTHLIPITPIEDDDASVDTLFDNVPS 182
           RE+RVLEAVYPRPSAIP NPS+L  V+DS  ND    +IPIT IED+D  VDT   ++  
Sbjct: 114 REIRVLEAVYPRPSAIPLNPSVLADVEDSGHNDVQPPVIPITSIEDEDVGVDTSSASMAP 173

Query: 183 NTAPMSLSAQLSSPGIPAFQXXXXXXXXXXXXFVAP-AATALGVEPDIVTAAYTALSAVM 359
                S  + LS  GI A                 P A   +GVEPD+V AA  A  A++
Sbjct: 174 FNIHTSTQSFLSVQGIAAPSQSVVPNNRNHPTSNKPVAGIPVGVEPDVVAAASAAFGAIV 233

Query: 360 ATNDQGNLIDPDLLVKILRDPQLMEKLGSSHGARISPQIMPKPRLQGITLPDPPLAHINR 539
            +N+ GN+ID +LL+KIL +P+++EKL         PQ M +P    +++ DPP  HINR
Sbjct: 234 NSNEHGNMIDHELLIKILSNPKMIEKLVK------DPQPMTRP--PQMSIADPPPVHINR 285

Query: 540 SEAVAS-SSAATPCRPFYPP--AGREGPIPNLRXXXXXXXXXXXXXXXXXXXXXXXKDIN 710
           +E+ ++ SS A     FYP       G  P+ R                       KDIN
Sbjct: 286 TESSSTPSSTALSSGHFYPQPNVAGMGRFPDAR---PPPHAAISVPSPPAVGPPPAKDIN 342

Query: 711 YYKSLIQQHGGER 749
           YYKSLIQQHGG+R
Sbjct: 343 YYKSLIQQHGGDR 355


>ref|XP_002306911.1| predicted protein [Populus trichocarpa] gi|222856360|gb|EEE93907.1|
           predicted protein [Populus trichocarpa]
          Length = 398

 Score =  154 bits (388), Expect = 2e-35
 Identities = 106/253 (41%), Positives = 138/253 (54%), Gaps = 3/253 (1%)
 Frame = +3

Query: 3   REMRVLEAVYPRPSAIPPNPSMLISVDDSYDNDQHTHLIPITPIEDDDASVDTLFDNVPS 182
           RE+RVLEAVYPRPSAIPPNP+  + ++ S  ND    LIPITPIED+DA+ +   D +  
Sbjct: 93  REIRVLEAVYPRPSAIPPNPAFSVDLESSQHNDHQIPLIPITPIEDEDAAEEP-SDVMGP 151

Query: 183 NTAPMSLSAQLSSPGIPAFQXXXXXXXXXXXXFVAPAATAL-GVEPDIVTAAYTALSAVM 359
           +  PMS  AQL + G+P+ Q               P A  L GVEP  V AA  A +AV 
Sbjct: 152 SMGPMSSQAQLLASGVPSSQSSIPSIPNE-----KPTAGLLPGVEPGAVAAASAAFAAV- 205

Query: 360 ATNDQGNLIDPDLLVKILRDPQLMEKLGSSHGARISPQIMPKPRLQGITLPDPPLAHINR 539
            +N+QG+LID DLL+KIL +P+L+EKL + +GA  + Q +PK          PPLA    
Sbjct: 206 KSNEQGSLIDHDLLIKILSNPKLVEKLVTDYGAVANAQNIPK----------PPLA---- 251

Query: 540 SEAVASSSAATPCRPFY--PPAGREGPIPNLRXXXXXXXXXXXXXXXXXXXXXXXKDINY 713
                +S  ATP   FY  P     G +P+ R                       KD++Y
Sbjct: 252 ESITQASLTATPSGSFYTQPNGTGMGVLPSAR------VLPPGVPSSPSIGATQTKDMSY 305

Query: 714 YKSLIQQHGGERQ 752
           YK+LIQQHGG+RQ
Sbjct: 306 YKNLIQQHGGDRQ 318


Top