BLASTX nr result

ID: Panax21_contig00020127 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00020127
         (975 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   118   2e-24
ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2...   118   2e-24
ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|2...   115   2e-23
ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...   114   3e-23
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    95   2e-17

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
            predicted protein [Populus trichocarpa]
          Length = 517

 Score =  118 bits (296), Expect = 2e-24
 Identities = 87/271 (32%), Positives = 123/271 (45%), Gaps = 37/271 (13%)
 Frame = +2

Query: 2    KVLQLRALAIKFTLFHIGNGETTSL*FDPWINMVPLASSTHSSLIINSGLGPNANVRDII 181
            K+L+LR+LA     + IG+G TTSL FD W    PLA S     I +SG+  NA V  +I
Sbjct: 219  KILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLI 278

Query: 182  RDSTWHLPS--------------SNHN------DFLVFRDSFD-----------LLRHCD 268
            ++S W  P+              SN N      D LV+ DS +           L RH  
Sbjct: 279  QNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDELVWLDSPNHRFSVKVAWEQLRRHRQ 338

Query: 269  -----SLVWNKILIPRYSFTLWLAFHRGLRTMDRLLNFGMLVNSTCVLCSSQAETFEHLF 433
                  +VW K  +PR+SF LW+A  + L T D+L  FG+   + C LC    E   HLF
Sbjct: 339  MVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLF 398

Query: 434  FRCDYSYRVLLSILRHCGWRGFSRSWSSLTDY-LIHYTSPKFHHSLLHLGFTAVVYCVWN 610
            F C Y+  +   +   C     ++ W     +  + +    F +    L F A VY VW 
Sbjct: 399  FECSYTKAIWWDVCDRCDIPRMTKGWDEWIRWATVSWHGKSFVNFSCKLSFAATVYHVWQ 458

Query: 611  EGNARIFRHKSCPVRNLIADILQMLKCKLHI 703
            E NARIF   S     ++  I  +++ KL +
Sbjct: 459  ERNARIFAGMSRTPNLVLNQIECIIRDKLDL 489


>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
            predicted protein [Populus trichocarpa]
          Length = 1386

 Score =  118 bits (295), Expect = 2e-24
 Identities = 86/271 (31%), Positives = 123/271 (45%), Gaps = 37/271 (13%)
 Frame = +2

Query: 2    KVLQLRALAIKFTLFHIGNGETTSL*FDPWINMVPLASSTHSSLIINSGLGPNANVRDII 181
            K+L+LR+LA     + IG+G TTSL FD W    PLA S     I +SG+  NA V  +I
Sbjct: 1092 KILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLI 1151

Query: 182  RDSTWHLPS--------------SNHN------DFLVFRDSFD-----------LLRHCD 268
            ++S W  P+              SN N      D +V+ DS +           L RH  
Sbjct: 1152 QNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDEIVWLDSPNHRFLVKVAWEHLRRHRQ 1211

Query: 269  -----SLVWNKILIPRYSFTLWLAFHRGLRTMDRLLNFGMLVNSTCVLCSSQAETFEHLF 433
                  +VW K  +PR+SF LW+A  + L T D+L  FG+   + C LC    E   HLF
Sbjct: 1212 MVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLYRFGIHGPNRCSLCLRNNEDHNHLF 1271

Query: 434  FRCDYSYRVLLSILRHCGWRGFSRSWSSLTDY-LIHYTSPKFHHSLLHLGFTAVVYCVWN 610
            F C Y+  +   +   C     ++ W     +  + +    F +    L F A VY VW 
Sbjct: 1272 FECSYTKAIWWDVCDRCDIPRMTKGWDEWIRWATVSWHGKSFVNFSRKLSFAATVYHVWQ 1331

Query: 611  EGNARIFRHKSCPVRNLIADILQMLKCKLHI 703
            E NARIF   S     ++  I  +++ KL +
Sbjct: 1332 ERNARIFAGMSRTPNLVLNQIECIIRDKLDL 1362


>ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|222849970|gb|EEE87517.1|
           predicted protein [Populus trichocarpa]
          Length = 331

 Score =  115 bits (287), Expect = 2e-23
 Identities = 81/247 (32%), Positives = 112/247 (45%), Gaps = 37/247 (14%)
 Frame = +2

Query: 2   KVLQLRALAIKFTLFHIGNGETTSL*FDPWINMVPLASSTHSSLIINSGLGPNANVRDII 181
           K+L+LR+LA     + IG+G TTSL FD W    PLA S     I +SG+  NA V  +I
Sbjct: 37  KILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLI 96

Query: 182 RDSTWHLPS--------------SNHN------DFLVFRDSFD-----------LLRH-- 262
           ++S W  P+              SN N      D +V+ DS +           L RH  
Sbjct: 97  QNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDEIVWLDSPNHRFSVKVAWEQLRRHRH 156

Query: 263 ---CDSLVWNKILIPRYSFTLWLAFHRGLRTMDRLLNFGMLVNSTCVLCSSQAETFEHLF 433
                 +VW K  +PR+SF LW+   + L T D+L  FG+   + C LC    E   HLF
Sbjct: 157 MVEWHDIVWFKNAVPRHSFLLWMVVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLF 216

Query: 434 FRCDYSYRVLLSILRHCGWRGFSRSWSSLTDY-LIHYTSPKFHHSLLHLGFTAVVYCVWN 610
           F C Y+  +   +   C     ++ W     +  + +    F +    L F A VY VW 
Sbjct: 217 FECSYTKAIWWDVCDRCDIPRMTKGWDEWIRWATVSWHGKSFVNFSRKLSFAATVYHVWQ 276

Query: 611 EGNARIF 631
           E NARIF
Sbjct: 277 ERNARIF 283


>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
            predicted protein [Populus trichocarpa]
          Length = 1046

 Score =  114 bits (286), Expect = 3e-23
 Identities = 80/247 (32%), Positives = 112/247 (45%), Gaps = 37/247 (14%)
 Frame = +2

Query: 2    KVLQLRALAIKFTLFHIGNGETTSL*FDPWINMVPLASSTHSSLIINSGLGPNANVRDII 181
            K+L+LR+LA     + IG+G TTSL FD W    PLA S     I +SG+  NA V  +I
Sbjct: 752  KILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLI 811

Query: 182  RDSTWHLPS--------------SNHN------DFLVFRDSFD-----------LLRHCD 268
            ++S W  P+              SN N      D +++ DS +           L RH  
Sbjct: 812  QNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDEIIWLDSPNHRFSVKVAWEQLRRHRQ 871

Query: 269  -----SLVWNKILIPRYSFTLWLAFHRGLRTMDRLLNFGMLVNSTCVLCSSQAETFEHLF 433
                  +VW K  +PR+SF LW+   + L T D+L  FG+   + C LC    E   HLF
Sbjct: 872  LVEWHDIVWFKNAVPRHSFLLWMVVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLF 931

Query: 434  FRCDYSYRVLLSILRHCGWRGFSRSWSSLTDY-LIHYTSPKFHHSLLHLGFTAVVYCVWN 610
            F C Y+  +   +   C     ++ W     +  + +    F +    L F A VY VW 
Sbjct: 932  FECSYTKAIWWDVCDRCDIPRMTKGWDEWIRWATVSWHGKSFINFSRKLSFAATVYHVWQ 991

Query: 611  EGNARIF 631
            E NARIF
Sbjct: 992  ERNARIF 998


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score = 95.1 bits (235), Expect = 2e-17
 Identities = 74/292 (25%), Positives = 120/292 (41%), Gaps = 39/292 (13%)
 Frame = +2

Query: 2    KVLQLRALAIKFTLFHIGNGETTSL*FDPWINMVPLASSTHSSLIINSGLGPNANV---- 169
            ++L+ R +A  F    + NG  TS  FD W    PL + T +   I+ G+  +  +    
Sbjct: 653  RLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKGPLINLTGARGAIDMGISRHMTLAEAW 712

Query: 170  ----------------RDIIRDSTWHLPSSNHNDFLVFRDSFDLL--RHCDSLVWNKI-- 289
                             +I+     H  +    D +++R   D+   R      WN I  
Sbjct: 713  SRRRRKRHRVEILNEFEEILLQKYQHR-NIELEDAILWRGKEDVFKARFSTKDTWNHIRT 771

Query: 290  ---------------LIPRYSFTLWLAFHRGLRTMDRLLNFGMLVNSTCVLCSSQAETFE 424
                             P++SF  WLA    L T DR++ +     +TCV CSS  ET +
Sbjct: 772  SSNQRAWHKGVWFAHATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRD 831

Query: 425  HLFFRCDYSYRVLLSILRHCGWRGFSRSWSSLTDYLIHYTSPKFHHSLLHLGFTAVVYCV 604
            HLFF+C YS  +  SI ++     FS  WS++ +Y+      +    L    F   ++ +
Sbjct: 832  HLFFQCCYSSEIWTSIAKNVYKDRFSTKWSAVVNYISDSQPDRIQSFLSRYTFQVSIHSI 891

Query: 605  WNEGNARIFRHKSCPVRNLIADILQMLKCKLHINSKFLKVKYRSGFRQLSLN 760
            W E N+R    KS    NLI  I + ++ +L    K   ++   G + L L+
Sbjct: 892  WRERNSRRHGEKSRSASNLIRQIDKTIRNQLSTIKKKGDLRLEKGLQTLILD 943


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