BLASTX nr result
ID: Panax21_contig00019346
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00019346
(901 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 79 4e-57
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 79 4e-57
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin... 82 9e-54
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E sub... 76 5e-50
ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocar... 75 3e-49
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E
subunit 1-like [Cucumis sativus]
Length = 2019
Score = 79.0 bits (193), Expect(4) = 4e-57
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = +2
Query: 407 FFVPNEVLDSIHT*IHNVSPLLYYLWSSYNELIELQLEKHTRHVTMSVASFILKSSAMDN 586
+ +P L ++ I +SPLLY L S++NEL+ELQLE H R V + +FILK S++
Sbjct: 654 YSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENHLRSVKVPFTNFILKLSSLGK 713
Query: 587 LIDSKSDSAINKVVQQIIF 643
L DSKS+SAINKVVQQI F
Sbjct: 714 LFDSKSESAINKVVQQIGF 732
Score = 77.4 bits (189), Expect(4) = 4e-57
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 5/92 (5%)
Frame = +1
Query: 640 FLGMQLSDRERFYSKTLVDDINSNFLEKYPFCE-NYSYEELRVVSSCLFDGLDPYQVMIH 816
FLG+QLSD+ RFYSK+L++D+ S F +Y + +Y E +V C F GLDPY+ M+H
Sbjct: 732 FLGLQLSDKGRFYSKSLIEDVASLFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVH 791
Query: 817 S**RSDRSFIKR----VAEPETLFNNLMALLR 900
S S R + R + EP TLF NLMA+LR
Sbjct: 792 S--ISTREVMVRSSRGLTEPGTLFKNLMAILR 821
Score = 72.8 bits (177), Expect(4) = 4e-57
Identities = 32/53 (60%), Positives = 43/53 (81%)
Frame = +1
Query: 250 FNRVIMPSALNDIFTYIFFGKGPNEVLRFFAFLQPILMEYLYSDGFSAGLEDF 408
F+R MPS +N+I T IFF KGP EVL+FF LQP+LME+++S+GFS GL+D+
Sbjct: 602 FDRDAMPSLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDDY 654
Score = 61.2 bits (147), Expect(4) = 4e-57
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = +3
Query: 87 LMFKNYFFNRAAAQQLALYFCGNLPSPALLRAQNSGPLWTILQLLQTALPLNFD 248
+MF+ YF +AAAQQLA++ LP PALL ++ WT LQ+LQT LP +FD
Sbjct: 531 MMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFD 584
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 79.0 bits (193), Expect(4) = 4e-57
Identities = 42/79 (53%), Positives = 55/79 (69%)
Frame = +2
Query: 407 FFVPNEVLDSIHT*IHNVSPLLYYLWSSYNELIELQLEKHTRHVTMSVASFILKSSAMDN 586
+ +P L ++ I +SPLLY L S++NEL+ELQLE H R V + +FILK S++
Sbjct: 624 YSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENHLRSVKVPFTNFILKLSSLGK 683
Query: 587 LIDSKSDSAINKVVQQIIF 643
L DSKS+SAINKVVQQI F
Sbjct: 684 LFDSKSESAINKVVQQIGF 702
Score = 77.4 bits (189), Expect(4) = 4e-57
Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 5/92 (5%)
Frame = +1
Query: 640 FLGMQLSDRERFYSKTLVDDINSNFLEKYPFCE-NYSYEELRVVSSCLFDGLDPYQVMIH 816
FLG+QLSD+ RFYSK+L++D+ S F +Y + +Y E +V C F GLDPY+ M+H
Sbjct: 702 FLGLQLSDKGRFYSKSLIEDVASLFHNRYSSDKIDYPSAEFGLVKGCFFHGLDPYEEMVH 761
Query: 817 S**RSDRSFIKR----VAEPETLFNNLMALLR 900
S S R + R + EP TLF NLMA+LR
Sbjct: 762 S--ISTREVMVRSSRGLTEPGTLFKNLMAILR 791
Score = 72.8 bits (177), Expect(4) = 4e-57
Identities = 32/53 (60%), Positives = 43/53 (81%)
Frame = +1
Query: 250 FNRVIMPSALNDIFTYIFFGKGPNEVLRFFAFLQPILMEYLYSDGFSAGLEDF 408
F+R MPS +N+I T IFF KGP EVL+FF LQP+LME+++S+GFS GL+D+
Sbjct: 572 FDRDAMPSLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDDY 624
Score = 61.2 bits (147), Expect(4) = 4e-57
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = +3
Query: 87 LMFKNYFFNRAAAQQLALYFCGNLPSPALLRAQNSGPLWTILQLLQTALPLNFD 248
+MF+ YF +AAAQQLA++ LP PALL ++ WT LQ+LQT LP +FD
Sbjct: 501 MMFRKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFD 554
>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 991
Score = 81.6 bits (200), Expect(4) = 9e-54
Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 4/91 (4%)
Frame = +1
Query: 640 FLGMQLSDRERFYSKTLVDDINSNFLEKYPFCENYSYEELRVVSSCLFDGLDPYQVMIHS 819
FLG+Q+SDR +FY+KTLV+D+ +F KYP +Y + ++ SC F GLDPY+ M+HS
Sbjct: 705 FLGLQISDRGKFYTKTLVEDMALHFESKYPSDIDYPSAKHGLIQSCFFHGLDPYEEMVHS 764
Query: 820 **RSDRSFIKR----VAEPETLFNNLMALLR 900
S R + R ++EP TLF NLMA+LR
Sbjct: 765 --ISAREVMVRSTRGLSEPGTLFKNLMAILR 793
Score = 67.0 bits (162), Expect(4) = 9e-54
Identities = 30/56 (53%), Positives = 42/56 (75%)
Frame = +1
Query: 250 FNRVIMPSALNDIFTYIFFGKGPNEVLRFFAFLQPILMEYLYSDGFSAGLEDFFCS 417
F+R ++ + +NDI +FF KGP+ V +FF LQP+LME L+S+GFS GLEDF+ S
Sbjct: 575 FSRDVVQAVINDIVISMFFEKGPDAVFKFFNSLQPLLMESLFSEGFSVGLEDFYIS 630
Score = 66.2 bits (160), Expect(4) = 9e-54
Identities = 36/79 (45%), Positives = 49/79 (62%)
Frame = +2
Query: 407 FFVPNEVLDSIHT*IHNVSPLLYYLWSSYNELIELQLEKHTRHVTMSVASFILKSSAMDN 586
F++ + +S LL L S+YNEL+ LQLE H R + VA FI++ S++ +
Sbjct: 627 FYISRAAIGGTRRDFKVISSLLSQLRSTYNELMALQLENHIRRAKLPVADFIVRLSSIGD 686
Query: 587 LIDSKSDSAINKVVQQIIF 643
LID KSDSA+ KVVQQI F
Sbjct: 687 LIDYKSDSAMTKVVQQIGF 705
Score = 63.9 bits (154), Expect(4) = 9e-54
Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = +3
Query: 90 MFKNYFFNRAAAQQLALYFCGN-LPSPALLRAQNSGPLWTILQLLQTALPLNFD 248
MF YF +RAAAQQLA++ + LP PAL +A S P+WT LQ+LQTALP FD
Sbjct: 504 MFNTYFLDRAAAQQLAMFVSSSSLPQPALWKAHCSVPIWTALQILQTALPSQFD 557
>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine
max]
Length = 2020
Score = 76.3 bits (186), Expect(4) = 5e-50
Identities = 45/92 (48%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Frame = +1
Query: 640 FLGMQLSDRERFYSKTLVDDINSNFLEKYPF-CENYSYEELRVVSSCLFDGLDPYQVMIH 816
FLG QL DR RFYSK LVDD+ S+F K + + Y E ++ C F+GLDPY+ M+H
Sbjct: 706 FLGQQLFDRGRFYSKGLVDDVASHFHAKCCYDGDGYPSAEYGLLKGCFFNGLDPYEEMVH 765
Query: 817 S**RSDRSFIKR----VAEPETLFNNLMALLR 900
S S R + R ++EP TLF NLMA+LR
Sbjct: 766 S--ISTREIMVRSSRGLSEPGTLFKNLMAILR 795
Score = 66.6 bits (161), Expect(4) = 5e-50
Identities = 37/79 (46%), Positives = 49/79 (62%)
Frame = +2
Query: 407 FFVPNEVLDSIHT*IHNVSPLLYYLWSSYNELIELQLEKHTRHVTMSVASFILKSSAMDN 586
F + + I I S LLY L S YNEL+ QLEKH + V + + +F LKS+ + +
Sbjct: 628 FSISRAIKRIIRRSIGKASSLLYQLRSLYNELVAQQLEKHIQDVELPIINFALKSTKLGD 687
Query: 587 LIDSKSDSAINKVVQQIIF 643
LIDSKS S I+KVVQQ+ F
Sbjct: 688 LIDSKSKSTIDKVVQQVGF 706
Score = 65.5 bits (158), Expect(4) = 5e-50
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +1
Query: 250 FNRVIMPSALNDIFTYIFFGKGPNEVLRFFAFLQPILMEYLYSDGFSAGLEDFFCS 417
F+R +P+ +N+I IFFGKGP E L+FF LQP LME L+++GFS LE+F S
Sbjct: 576 FSRDALPATINEIAASIFFGKGPMEALKFFDVLQPFLMESLFAEGFSVSLEEFSIS 631
Score = 57.8 bits (138), Expect(4) = 5e-50
Identities = 29/62 (46%), Positives = 38/62 (61%)
Frame = +3
Query: 87 LMFKNYFFNRAAAQQLALYFCGNLPSPALLRAQNSGPLWTILQLLQTALPLNFDF**GHY 266
++ K F RAAA QLA++ LP PALL+A + WT +Q+LQ ALP+ FD G Y
Sbjct: 505 MLVKRCFLGRAAANQLAMFLLLPLPRPALLKASSDDACWTSIQILQGALPMGFDCTGGRY 564
Query: 267 AI 272
I
Sbjct: 565 LI 566
>ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocarpa]
gi|222846466|gb|EEE84013.1| RNA polymerase IV subunit
[Populus trichocarpa]
Length = 842
Score = 75.5 bits (184), Expect(4) = 3e-49
Identities = 45/92 (48%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Frame = +1
Query: 640 FLGMQLSDRERFYSKTLVDDINSNFLEKYPF-CENYSYEELRVVSSCLFDGLDPYQVMIH 816
FLG+Q+SDR + YSKTLV+D+ S+F KYP NY + ++ S F GLD Y+ M H
Sbjct: 622 FLGLQVSDRGKLYSKTLVEDLASHFQSKYPTNLLNYPSAQYGLIQSSFFHGLDAYEEMAH 681
Query: 817 S**RSDRSFIKR----VAEPETLFNNLMALLR 900
S S R I R ++EP TLF NLMA+LR
Sbjct: 682 S--ISTREVIVRSSRGLSEPGTLFKNLMAILR 711
Score = 72.4 bits (176), Expect(4) = 3e-49
Identities = 42/81 (51%), Positives = 51/81 (62%)
Frame = +2
Query: 401 KIFFVPNEVLDSIHT*IHNVSPLLYYLWSSYNELIELQLEKHTRHVTMSVASFILKSSAM 580
K F + V SI +SPLL L S+YNEL+ELQ+E H + V V FIL SSA+
Sbjct: 542 KDFSISQAVKQSIQESFKVISPLLCNLRSTYNELVELQVENHIQDVKTPVLEFILTSSAL 601
Query: 581 DNLIDSKSDSAINKVVQQIIF 643
LIDSKSD A+ K+VQQI F
Sbjct: 602 GYLIDSKSDGAVAKLVQQIGF 622
Score = 63.2 bits (152), Expect(4) = 3e-49
Identities = 31/61 (50%), Positives = 42/61 (68%)
Frame = +1
Query: 238 LILTFNRVIMPSALNDIFTYIFFGKGPNEVLRFFAFLQPILMEYLYSDGFSAGLEDFFCS 417
L + FNR ++ S +N+I IFF KG VL+FF LQP+LME L+S+GFS L+DF S
Sbjct: 488 LKVDFNRDVVASMINEILISIFFEKGSGAVLKFFNALQPLLMENLFSEGFSVSLKDFSIS 547
Query: 418 E 420
+
Sbjct: 548 Q 548
Score = 52.4 bits (124), Expect(4) = 3e-49
Identities = 25/54 (46%), Positives = 36/54 (66%)
Frame = +3
Query: 87 LMFKNYFFNRAAAQQLALYFCGNLPSPALLRAQNSGPLWTILQLLQTALPLNFD 248
++FK F +++AAQQLA++ +LP PALL+ P WT Q+LQ ALP F+
Sbjct: 421 MIFKACFLDKSAAQQLAMFVSPDLPQPALLKVNCIRPYWTAHQILQMALPTCFN 474