BLASTX nr result

ID: Panax21_contig00019256 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00019256
         (779 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280452.1| PREDICTED: putative fasciclin-like arabinoga...    89   5e-28
ref|XP_002534506.1| hypothetical protein RCOM_0377590 [Ricinus c...    82   8e-28
ref|XP_002311490.1| predicted protein [Populus trichocarpa] gi|2...    81   2e-25
ref|XP_003592555.1| Fasciclin-like arabinogalactan protein [Medi...    73   1e-22
ref|XP_004165687.1| PREDICTED: putative fasciclin-like arabinoga...    76   3e-20

>ref|XP_002280452.1| PREDICTED: putative fasciclin-like arabinogalactan protein 20-like
           [Vitis vinifera]
          Length = 339

 Score = 89.4 bits (220), Expect(2) = 5e-28
 Identities = 38/72 (52%), Positives = 53/72 (73%)
 Frame = -3

Query: 222 VPCKLSWTDLANLKEGTELQTYLEGFNMIVTISNDIFMVNEVEITFPDMYYSDWLVVHGV 43
           +PCK+SW+DL N  +G+ L T LEGF + +T S D   +NEV + FPDMY+SDWLVVHG+
Sbjct: 244 LPCKVSWSDLVNFDDGSMLPTSLEGFTINITRSGDTLKLNEVSVAFPDMYHSDWLVVHGL 303

Query: 42  RQILSLQENPKQ 7
            ++L+L   P+Q
Sbjct: 304 GEVLTLLVGPEQ 315



 Score = 61.6 bits (148), Expect(2) = 5e-28
 Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
 Frame = -1

Query: 419 SLGDYSFRVPSETLRSRGYSVMASFMDLQLLGLGQ-PRLTVFAPVDEVMVGKIGDIPEY- 246
           S G  SF   S  LRSRGY VMASF+DLQLLG     ++TV AP DEVM+ ++G+  +  
Sbjct: 176 SSGGDSFDEASGVLRSRGYFVMASFLDLQLLGFRDGTKMTVLAPADEVMMDRVGNFSDIS 235

Query: 245 SSLFLR 228
           SS+FLR
Sbjct: 236 SSIFLR 241


>ref|XP_002534506.1| hypothetical protein RCOM_0377590 [Ricinus communis]
           gi|223525155|gb|EEF27876.1| hypothetical protein
           RCOM_0377590 [Ricinus communis]
          Length = 339

 Score = 81.6 bits (200), Expect(2) = 8e-28
 Identities = 34/64 (53%), Positives = 48/64 (75%)
 Frame = -3

Query: 222 VPCKLSWTDLANLKEGTELQTYLEGFNMIVTISNDIFMVNEVEITFPDMYYSDWLVVHGV 43
           VPCK++W DL +  +G    T+LEGF + V+ S DI M+NEV ++FPDMY ++WLVVHG+
Sbjct: 254 VPCKITWKDLVDFDDGMVFDTFLEGFGITVSRSGDILMLNEVPVSFPDMYRNEWLVVHGL 313

Query: 42  RQIL 31
           R +L
Sbjct: 314 RGML 317



 Score = 68.6 bits (166), Expect(2) = 8e-28
 Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 4/66 (6%)
 Frame = -1

Query: 413 GDYSFRVPSETLRSRGYSVMASFMDLQLLG----LGQPRLTVFAPVDEVMVGKIGDIPEY 246
           G Y F+  +  LRS G SVMASF+DLQL+       +P LTVFAP+DEVM G IGD+ +Y
Sbjct: 186 GVYLFKEATNVLRSNGCSVMASFLDLQLMSGFKEKQRPLLTVFAPLDEVMKGFIGDVDQY 245

Query: 245 SSLFLR 228
           S +FLR
Sbjct: 246 SLIFLR 251


>ref|XP_002311490.1| predicted protein [Populus trichocarpa] gi|222851310|gb|EEE88857.1|
           predicted protein [Populus trichocarpa]
          Length = 292

 Score = 81.3 bits (199), Expect(2) = 2e-25
 Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
 Frame = -3

Query: 222 VPCKLSWTDLANLKEGTELQTYLEGFNMIVTISNDIFMVN-EVEITFPDMYYSDWLVVHG 46
           VPCK+ W DL N  +G  L+TYLEGF + V+ S D  M+N +  + FPDMY++DWLV+HG
Sbjct: 212 VPCKIMWGDLVNFDDGVVLETYLEGFGITVSTSGDNLMLNDQASVNFPDMYHNDWLVIHG 271

Query: 45  VRQILSLQEN 16
           ++ IL   E+
Sbjct: 272 LQSILKEPES 281



 Score = 60.8 bits (146), Expect(2) = 2e-25
 Identities = 31/53 (58%), Positives = 41/53 (77%), Gaps = 2/53 (3%)
 Frame = -1

Query: 380 LRSRGYSVMASFMDLQLLG--LGQPRLTVFAPVDEVMVGKIGDIPEYSSLFLR 228
           L S+GYSVMASF+DLQL+     +  LT+FAPVDEV+   +GD+ EYSS+FL+
Sbjct: 157 LNSKGYSVMASFLDLQLMVGFTDKTALTIFAPVDEVIKAFLGDLREYSSMFLK 209


>ref|XP_003592555.1| Fasciclin-like arabinogalactan protein [Medicago truncatula]
           gi|355481603|gb|AES62806.1| Fasciclin-like
           arabinogalactan protein [Medicago truncatula]
          Length = 340

 Score = 72.8 bits (177), Expect(2) = 1e-22
 Identities = 30/65 (46%), Positives = 47/65 (72%)
 Frame = -3

Query: 222 VPCKLSWTDLANLKEGTELQTYLEGFNMIVTISNDIFMVNEVEITFPDMYYSDWLVVHGV 43
           VPCK  W DL +  +GT+L T+LEGF++ +T S  + ++N V + FPD++++D LVVHGV
Sbjct: 247 VPCKFLWNDLVDFGDGTQLPTFLEGFSINITRSGGVLILNGVPVFFPDVFFNDRLVVHGV 306

Query: 42  RQILS 28
             +L+
Sbjct: 307 TDVLA 311



 Score = 60.1 bits (144), Expect(2) = 1e-22
 Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
 Frame = -1

Query: 404 SFRVPSETLRSRGYSVMASFMDLQLLG-LGQPRLTVFAPVDEVMVGKIGDIPEYSSLFLR 228
           SF    +TL++ GYSVMASF+ +QL G + Q  +TVFAP DE+++ +IGD  +Y S F R
Sbjct: 185 SFEQAVKTLKTSGYSVMASFLGMQLSGNINQNGITVFAPTDEMVMNRIGDFEDYPSFFRR 244


>ref|XP_004165687.1| PREDICTED: putative fasciclin-like arabinogalactan protein 20-like
           [Cucumis sativus]
          Length = 328

 Score = 76.3 bits (186), Expect(2) = 3e-20
 Identities = 30/67 (44%), Positives = 48/67 (71%)
 Frame = -3

Query: 219 PCKLSWTDLANLKEGTELQTYLEGFNMIVTISNDIFMVNEVEITFPDMYYSDWLVVHGVR 40
           PC++SW DL +L++GTEL TY EG+ + VT S+ +  +N V + +P+MY ++WLVVHG+ 
Sbjct: 237 PCRISWNDLVDLEDGTELSTYSEGYTIYVTKSSGMLRINGVAVFYPNMYLNEWLVVHGLL 296

Query: 39  QILSLQE 19
            +  + E
Sbjct: 297 DVFPVAE 303



 Score = 48.5 bits (114), Expect(2) = 3e-20
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
 Frame = -1

Query: 386 ETLRSRGYSVMASFMDLQLLGLGQPR---LTVFAPVDEVMVGKIGDIPEYSSLFLRTL 222
           ETLRS GYS MA F++ Q+LG    +   +TVFAP D+ +  ++    +Y SL+ R +
Sbjct: 178 ETLRSHGYSSMALFLESQILGFSNGQSSMMTVFAPSDDALETRVDKFTDYPSLYFRQI 235


Top