BLASTX nr result

ID: Panax21_contig00019055 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00019055
         (1795 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285333.1| PREDICTED: BRCA1-associated protein [Vitis v...    82   5e-21
emb|CAN74457.1| hypothetical protein VITISV_012708 [Vitis vinifera]    82   5e-21
emb|CBI20546.3| unnamed protein product [Vitis vinifera]               90   2e-15
ref|XP_002273039.1| PREDICTED: BRCA1-associated protein-like [Vi...    90   2e-15
ref|XP_002325207.1| predicted protein [Populus trichocarpa] gi|2...    90   2e-15

>ref|XP_002285333.1| PREDICTED: BRCA1-associated protein [Vitis vinifera]
           gi|297738981|emb|CBI28226.3| unnamed protein product
           [Vitis vinifera]
          Length = 470

 Score = 81.6 bits (200), Expect(3) = 5e-21
 Identities = 39/60 (65%), Positives = 43/60 (71%)
 Frame = -3

Query: 455 FATEFRYKEGHAIRHSNDTQHCYSLELETQQI*DYVGDKYVHRLNQSKIDSKSVMTNFHC 276
           FA   RYKEGHAIRH  D QH YSL+LE QQ+ DYVGD +VHRLNQSK D K  M +  C
Sbjct: 224 FAGCGRYKEGHAIRHWKDAQHSYSLDLEKQQVWDYVGDSFVHRLNQSKADGKLAMMDSRC 283



 Score = 44.7 bits (104), Expect(3) = 5e-21
 Identities = 29/77 (37%), Positives = 41/77 (53%)
 Frame = -1

Query: 826 CVEQLSLFTSTFLSYYHSVCCHMSVAEHVPCMLL*NGVTNP**DYICY*VCRLCQQQDEK 647
           C+E+L   TS  L+   ++C H   +   PC+     ++       C  VC+ CQQQDEK
Sbjct: 159 CLERLDQDTSGILN---TLCDH---SFQCPCISKRTNLS-------CQ-VCQFCQQQDEK 204

Query: 646 PTCAVCGRLTNP*VCLM 596
           PTC VCG   N  VC++
Sbjct: 205 PTCFVCGTSENLWVCMI 221



 Score = 22.7 bits (47), Expect(3) = 5e-21
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 597 CGFVGCGR 574
           CGF GCGR
Sbjct: 222 CGFAGCGR 229


>emb|CAN74457.1| hypothetical protein VITISV_012708 [Vitis vinifera]
          Length = 438

 Score = 81.6 bits (200), Expect(3) = 5e-21
 Identities = 39/60 (65%), Positives = 43/60 (71%)
 Frame = -3

Query: 455 FATEFRYKEGHAIRHSNDTQHCYSLELETQQI*DYVGDKYVHRLNQSKIDSKSVMTNFHC 276
           FA   RYKEGHAIRH  D QH YSL+LE QQ+ DYVGD +VHRLNQSK D K  M +  C
Sbjct: 224 FAGCGRYKEGHAIRHWKDAQHSYSLDLEKQQVWDYVGDSFVHRLNQSKADGKLAMMDSRC 283



 Score = 44.7 bits (104), Expect(3) = 5e-21
 Identities = 29/77 (37%), Positives = 41/77 (53%)
 Frame = -1

Query: 826 CVEQLSLFTSTFLSYYHSVCCHMSVAEHVPCMLL*NGVTNP**DYICY*VCRLCQQQDEK 647
           C+E+L   TS  L+   ++C H   +   PC+     ++       C  VC+ CQQQDEK
Sbjct: 159 CLERLDQDTSGILN---TLCDH---SFQCPCISKRTNLS-------CQ-VCQFCQQQDEK 204

Query: 646 PTCAVCGRLTNP*VCLM 596
           PTC VCG   N  VC++
Sbjct: 205 PTCFVCGTSENLWVCMI 221



 Score = 22.7 bits (47), Expect(3) = 5e-21
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 597 CGFVGCGR 574
           CGF GCGR
Sbjct: 222 CGFAGCGR 229


>emb|CBI20546.3| unnamed protein product [Vitis vinifera]
          Length = 464

 Score = 90.1 bits (222), Expect = 2e-15
 Identities = 48/94 (51%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
 Frame = -3

Query: 440 RYKEGHAIRHSNDTQHCYSLELETQQI*DYVGDKYVHRLNQSKIDSKSVMTNFHCXXXXX 261
           RYKEGHAIRH  +TQHCYSLELETQ++ DYVGD YVHRL QSK D K V  N HC     
Sbjct: 255 RYKEGHAIRHWKETQHCYSLELETQRVWDYVGDNYVHRLIQSKTDGKLVELNAHCAHADH 314

Query: 260 XXXXXXSMHKEHVSDLNLKQ-----INHASDALT 174
                       +S++ L       +N  SD LT
Sbjct: 315 GCGSCDCSDDAGISEVLLNSRVEAIVNEYSDLLT 348


>ref|XP_002273039.1| PREDICTED: BRCA1-associated protein-like [Vitis vinifera]
          Length = 439

 Score = 90.1 bits (222), Expect = 2e-15
 Identities = 48/94 (51%), Positives = 55/94 (58%), Gaps = 5/94 (5%)
 Frame = -3

Query: 440 RYKEGHAIRHSNDTQHCYSLELETQQI*DYVGDKYVHRLNQSKIDSKSVMTNFHCXXXXX 261
           RYKEGHAIRH  +TQHCYSLELETQ++ DYVGD YVHRL QSK D K V  N HC     
Sbjct: 230 RYKEGHAIRHWKETQHCYSLELETQRVWDYVGDNYVHRLIQSKTDGKLVELNAHCAHADH 289

Query: 260 XXXXXXSMHKEHVSDLNLKQ-----INHASDALT 174
                       +S++ L       +N  SD LT
Sbjct: 290 GCGSCDCSDDAGISEVLLNSRVEAIVNEYSDLLT 323


>ref|XP_002325207.1| predicted protein [Populus trichocarpa] gi|222866641|gb|EEF03772.1|
           predicted protein [Populus trichocarpa]
          Length = 486

 Score = 90.1 bits (222), Expect = 2e-15
 Identities = 42/55 (76%), Positives = 44/55 (80%)
 Frame = -3

Query: 440 RYKEGHAIRHSNDTQHCYSLELETQQI*DYVGDKYVHRLNQSKIDSKSVMTNFHC 276
           RYKEGHA RH  DTQHCYSL+L TQQI DYVGD YVHRLNQSK D KS+ TN  C
Sbjct: 244 RYKEGHAKRHWQDTQHCYSLDLRTQQIWDYVGDNYVHRLNQSKTDGKSIDTNSCC 298


Top