BLASTX nr result

ID: Panax21_contig00019026 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00019026
         (888 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274643.2| PREDICTED: methyl-CpG-binding domain-contain...   147   4e-33
emb|CBI34941.3| unnamed protein product [Vitis vinifera]              147   4e-33
ref|XP_002884279.1| methyl-CpG-binding domain 9 [Arabidopsis lyr...   134   4e-29
ref|XP_002517349.1| DNA binding protein, putative [Ricinus commu...   131   2e-28
ref|NP_186795.1| methyl-CPG-binding domain 9 [Arabidopsis thalia...   131   2e-28

>ref|XP_002274643.2| PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Vitis
            vinifera]
          Length = 2164

 Score =  147 bits (370), Expect = 4e-33
 Identities = 72/101 (71%), Positives = 86/101 (85%)
 Frame = +3

Query: 126  SSVILPKAHISLLNLLIGEMLFKVAAYVDPNFDAGETKSKRGRKKDVENSVIAKRTKLDM 305
            S V L KAH SLL +L+ E+ FKVAA VDPNFD+GE+KS+RGRKKD +N++  K+TKL+M
Sbjct: 805  SGVTLTKAHNSLLKVLVSELQFKVAALVDPNFDSGESKSRRGRKKDADNAIPTKKTKLNM 864

Query: 306  LPVNELTWPELAR*YILVVLSMEGNLDSAESTCRESGKVFQ 428
            LP+NELTWPELAR YIL VLSM+GNLDSAE T RESGKVF+
Sbjct: 865  LPINELTWPELARRYILCVLSMDGNLDSAEITIRESGKVFR 905


>emb|CBI34941.3| unnamed protein product [Vitis vinifera]
          Length = 1907

 Score =  147 bits (370), Expect = 4e-33
 Identities = 72/101 (71%), Positives = 86/101 (85%)
 Frame = +3

Query: 126  SSVILPKAHISLLNLLIGEMLFKVAAYVDPNFDAGETKSKRGRKKDVENSVIAKRTKLDM 305
            S V L KAH SLL +L+ E+ FKVAA VDPNFD+GE+KS+RGRKKD +N++  K+TKL+M
Sbjct: 743  SGVTLTKAHNSLLKVLVSELQFKVAALVDPNFDSGESKSRRGRKKDADNAIPTKKTKLNM 802

Query: 306  LPVNELTWPELAR*YILVVLSMEGNLDSAESTCRESGKVFQ 428
            LP+NELTWPELAR YIL VLSM+GNLDSAE T RESGKVF+
Sbjct: 803  LPINELTWPELARRYILCVLSMDGNLDSAEITIRESGKVFR 843


>ref|XP_002884279.1| methyl-CpG-binding domain 9 [Arabidopsis lyrata subsp. lyrata]
            gi|297330119|gb|EFH60538.1| methyl-CpG-binding domain 9
            [Arabidopsis lyrata subsp. lyrata]
          Length = 2183

 Score =  134 bits (336), Expect = 4e-29
 Identities = 68/110 (61%), Positives = 91/110 (82%)
 Frame = +3

Query: 99   SFTAHINCISSVILPKAHISLLNLLIGEMLFKVAAYVDPNFDAGETKSKRGRKKDVENSV 278
            S+++H  C+ + +L + HISLL +LI E+  KVAA+VDPNFD+GE++S+RGRKKD ++++
Sbjct: 868  SYSSHGPCVGA-LLTRTHISLLQVLICELQSKVAAFVDPNFDSGESRSRRGRKKD-DSTL 925

Query: 279  IAKRTKLDMLPVNELTWPELAR*YILVVLSMEGNLDSAESTCRESGKVFQ 428
             AKR KL MLPVNE TWPELAR YIL +LSM+GNL+SAE + RESGKVF+
Sbjct: 926  SAKRNKLHMLPVNEFTWPELARRYILSLLSMDGNLESAEISARESGKVFR 975


>ref|XP_002517349.1| DNA binding protein, putative [Ricinus communis]
            gi|223543360|gb|EEF44891.1| DNA binding protein, putative
            [Ricinus communis]
          Length = 2145

 Score =  131 bits (329), Expect = 2e-28
 Identities = 66/99 (66%), Positives = 79/99 (79%)
 Frame = +3

Query: 132  VILPKAHISLLNLLIGEMLFKVAAYVDPNFDAGETKSKRGRKKDVENSVIAKRTKLDMLP 311
            V L + H SLL++LI E+  KVA  VDPNFD+GE KSKRGRKKDV++S + +R+K + LP
Sbjct: 809  VTLTEVHGSLLSVLIRELQAKVAVLVDPNFDSGELKSKRGRKKDVDSSTLIRRSKCNTLP 868

Query: 312  VNELTWPELAR*YILVVLSMEGNLDSAESTCRESGKVFQ 428
            +N LTWPELAR YIL VLSMEGNLDS E T RESGKVF+
Sbjct: 869  INALTWPELARRYILAVLSMEGNLDSTEITARESGKVFR 907


>ref|NP_186795.1| methyl-CPG-binding domain 9 [Arabidopsis thaliana]
            gi|75337201|sp|Q9SGH2.1|MBD9_ARATH RecName:
            Full=Methyl-CpG-binding domain-containing protein 9;
            Short=AtMBD9; Short=MBD09; AltName: Full=Histone acetyl
            tranferase MBD9; AltName: Full=Methyl-CpG-binding protein
            MBD9 gi|6692266|gb|AAF24616.1|AC010870_9 unknown protein
            [Arabidopsis thaliana] gi|332640148|gb|AEE73669.1|
            methyl-CPG-binding domain 9 [Arabidopsis thaliana]
          Length = 2176

 Score =  131 bits (329), Expect = 2e-28
 Identities = 67/104 (64%), Positives = 87/104 (83%)
 Frame = +3

Query: 117  NCISSVILPKAHISLLNLLIGEMLFKVAAYVDPNFDAGETKSKRGRKKDVENSVIAKRTK 296
            +C+ + +L +AHISLL +LI E+  KVAA+VDPNFD+GE++S+RGRKKD ++++ AKR K
Sbjct: 874  SCVGA-LLTRAHISLLQVLICELQSKVAAFVDPNFDSGESRSRRGRKKD-DSTLSAKRNK 931

Query: 297  LDMLPVNELTWPELAR*YILVVLSMEGNLDSAESTCRESGKVFQ 428
            L MLPVNE TWPELAR YIL +LSM+GNL+SAE   RESGKVF+
Sbjct: 932  LHMLPVNEFTWPELARRYILSLLSMDGNLESAEIAARESGKVFR 975


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