BLASTX nr result

ID: Panax21_contig00018907 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00018907
         (405 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34587.3| unnamed protein product [Vitis vinifera]              131   5e-29
ref|XP_002280081.1| PREDICTED: mediator of RNA polymerase II tra...   131   5e-29
ref|XP_002527873.1| nut2, putative [Ricinus communis] gi|2235327...   130   1e-28
ref|XP_002299427.1| predicted protein [Populus trichocarpa] gi|2...   128   4e-28
ref|XP_002303692.1| predicted protein [Populus trichocarpa] gi|2...   124   6e-27

>emb|CBI34587.3| unnamed protein product [Vitis vinifera]
          Length = 284

 Score =  131 bits (330), Expect = 5e-29
 Identities = 66/89 (74%), Positives = 71/89 (79%)
 Frame = +3

Query: 138 EDPKQNLDQVINSIQNTLGMLHQLYLTVSSFNVASXXXXXXXXXXXXXXXDKMAKLSEKC 317
           EDPKQNL+QVINSIQ TLG+LHQLYLTVSSFNVAS               D M KLSEKC
Sbjct: 128 EDPKQNLNQVINSIQKTLGLLHQLYLTVSSFNVASQLPLLQRLNALVSELDNMTKLSEKC 187

Query: 318 NIQVPMEVLSLIDDGKNPDEFTREVLNSC 404
           NIQVPMEVL+LID+GKNPDEFTR+VLNSC
Sbjct: 188 NIQVPMEVLNLIDEGKNPDEFTRDVLNSC 216


>ref|XP_002280081.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10
           [Vitis vinifera]
          Length = 194

 Score =  131 bits (330), Expect = 5e-29
 Identities = 66/89 (74%), Positives = 71/89 (79%)
 Frame = +3

Query: 138 EDPKQNLDQVINSIQNTLGMLHQLYLTVSSFNVASXXXXXXXXXXXXXXXDKMAKLSEKC 317
           EDPKQNL+QVINSIQ TLG+LHQLYLTVSSFNVAS               D M KLSEKC
Sbjct: 38  EDPKQNLNQVINSIQKTLGLLHQLYLTVSSFNVASQLPLLQRLNALVSELDNMTKLSEKC 97

Query: 318 NIQVPMEVLSLIDDGKNPDEFTREVLNSC 404
           NIQVPMEVL+LID+GKNPDEFTR+VLNSC
Sbjct: 98  NIQVPMEVLNLIDEGKNPDEFTRDVLNSC 126


>ref|XP_002527873.1| nut2, putative [Ricinus communis] gi|223532724|gb|EEF34504.1| nut2,
           putative [Ricinus communis]
          Length = 187

 Score =  130 bits (326), Expect = 1e-28
 Identities = 64/89 (71%), Positives = 71/89 (79%)
 Frame = +3

Query: 138 EDPKQNLDQVINSIQNTLGMLHQLYLTVSSFNVASXXXXXXXXXXXXXXXDKMAKLSEKC 317
           +DPKQNL+ VINSIQ TLG+LHQLYLTVSSFN AS               DKMAKLSEKC
Sbjct: 31  DDPKQNLNNVINSIQKTLGLLHQLYLTVSSFNTASQLPLLQRLNGLVLELDKMAKLSEKC 90

Query: 318 NIQVPMEVLSLIDDGKNPDEFTREVLNSC 404
           NIQVP+EVL+LIDDGKNPDEFTR+V+NSC
Sbjct: 91  NIQVPLEVLNLIDDGKNPDEFTRDVINSC 119


>ref|XP_002299427.1| predicted protein [Populus trichocarpa] gi|222846685|gb|EEE84232.1|
           predicted protein [Populus trichocarpa]
          Length = 190

 Score =  128 bits (322), Expect = 4e-28
 Identities = 63/90 (70%), Positives = 71/90 (78%)
 Frame = +3

Query: 135 LEDPKQNLDQVINSIQNTLGMLHQLYLTVSSFNVASXXXXXXXXXXXXXXXDKMAKLSEK 314
           ++DPKQNL+QVINSIQ TLG+LHQLYLTVSSFN AS               D M KLSEK
Sbjct: 33  VDDPKQNLNQVINSIQKTLGLLHQLYLTVSSFNTASQLPLLQRLNGLVTELDNMVKLSEK 92

Query: 315 CNIQVPMEVLSLIDDGKNPDEFTREVLNSC 404
           CNIQVPMEVL+LIDDGKNPDEF+R+V+NSC
Sbjct: 93  CNIQVPMEVLNLIDDGKNPDEFSRDVINSC 122


>ref|XP_002303692.1| predicted protein [Populus trichocarpa] gi|222841124|gb|EEE78671.1|
           predicted protein [Populus trichocarpa]
          Length = 185

 Score =  124 bits (312), Expect = 6e-27
 Identities = 62/90 (68%), Positives = 69/90 (76%)
 Frame = +3

Query: 135 LEDPKQNLDQVINSIQNTLGMLHQLYLTVSSFNVASXXXXXXXXXXXXXXXDKMAKLSEK 314
           ++DPKQNL+QVI+SIQ TLG LHQLYLTVSSFN AS               D M KLSE+
Sbjct: 28  VDDPKQNLNQVIDSIQKTLGQLHQLYLTVSSFNTASQLPLLQRLNGLVTELDNMVKLSER 87

Query: 315 CNIQVPMEVLSLIDDGKNPDEFTREVLNSC 404
           CNIQVPMEVL+LIDDGKNPDEFTR V+NSC
Sbjct: 88  CNIQVPMEVLNLIDDGKNPDEFTRGVINSC 117


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