BLASTX nr result

ID: Panax21_contig00018828 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00018828
         (786 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003530891.1| PREDICTED: nuclear pore complex protein Nup1...    73   6e-11
ref|XP_003525230.1| PREDICTED: nuclear pore complex protein Nup1...    73   6e-11
gb|AAF79236.1|AC006917_21 F10B6.25 [Arabidopsis thaliana]              73   8e-11
ref|NP_172938.2| nucleoporin 155 [Arabidopsis thaliana] gi|33219...    73   8e-11
ref|XP_004164793.1| PREDICTED: LOW QUALITY PROTEIN: nuclear pore...    72   1e-10

>ref|XP_003530891.1| PREDICTED: nuclear pore complex protein Nup155-like [Glycine max]
          Length = 1486

 Score = 73.2 bits (178), Expect = 6e-11
 Identities = 35/44 (79%), Positives = 39/44 (88%)
 Frame = +2

Query: 653 VCRLSTRAMQVLEDKLRSLEKFLRSRRKQKKGLYGCVADVGDLT 784
           VCRLS  AMQVLE KLRSLEKFLRSRR Q++GLYGCVA +GDL+
Sbjct: 692 VCRLSVGAMQVLEQKLRSLEKFLRSRRNQRRGLYGCVAGLGDLS 735


>ref|XP_003525230.1| PREDICTED: nuclear pore complex protein Nup155-like [Glycine max]
          Length = 1485

 Score = 73.2 bits (178), Expect = 6e-11
 Identities = 35/44 (79%), Positives = 39/44 (88%)
 Frame = +2

Query: 653 VCRLSTRAMQVLEDKLRSLEKFLRSRRKQKKGLYGCVADVGDLT 784
           VCRLS  AMQVLE KLRSLEKFLRSRR Q++GLYGCVA +GDL+
Sbjct: 692 VCRLSVGAMQVLEQKLRSLEKFLRSRRNQRRGLYGCVAGLGDLS 735


>gb|AAF79236.1|AC006917_21 F10B6.25 [Arabidopsis thaliana]
          Length = 1475

 Score = 72.8 bits (177), Expect = 8e-11
 Identities = 33/44 (75%), Positives = 39/44 (88%)
 Frame = +2

Query: 653 VCRLSTRAMQVLEDKLRSLEKFLRSRRKQKKGLYGCVADVGDLT 784
           +CRLST AM VLE K+RSLEKFLRSRR Q++GLYGCVA +GD+T
Sbjct: 690 ICRLSTSAMHVLESKIRSLEKFLRSRRNQRRGLYGCVAGLGDVT 733


>ref|NP_172938.2| nucleoporin 155 [Arabidopsis thaliana] gi|332191114|gb|AEE29235.1|
           nucleoporin 155 [Arabidopsis thaliana]
          Length = 1464

 Score = 72.8 bits (177), Expect = 8e-11
 Identities = 33/44 (75%), Positives = 39/44 (88%)
 Frame = +2

Query: 653 VCRLSTRAMQVLEDKLRSLEKFLRSRRKQKKGLYGCVADVGDLT 784
           +CRLST AM VLE K+RSLEKFLRSRR Q++GLYGCVA +GD+T
Sbjct: 690 ICRLSTSAMHVLESKIRSLEKFLRSRRNQRRGLYGCVAGLGDVT 733


>ref|XP_004164793.1| PREDICTED: LOW QUALITY PROTEIN: nuclear pore complex protein
           Nup155-like, partial [Cucumis sativus]
          Length = 1304

 Score = 72.4 bits (176), Expect = 1e-10
 Identities = 33/44 (75%), Positives = 40/44 (90%)
 Frame = +2

Query: 653 VCRLSTRAMQVLEDKLRSLEKFLRSRRKQKKGLYGCVADVGDLT 784
           VCRLS  AMQ+LE+KLR+LEKFLRSRR Q++GLYGCVA +GD+T
Sbjct: 691 VCRLSAGAMQILENKLRALEKFLRSRRNQRRGLYGCVAGLGDVT 734


Top