BLASTX nr result

ID: Panax21_contig00018688 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00018688
         (609 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34941.3| unnamed protein product [Vitis vinifera]              202   5e-50
ref|XP_002274643.2| PREDICTED: methyl-CpG-binding domain-contain...   193   2e-47
ref|XP_002517349.1| DNA binding protein, putative [Ricinus commu...   170   2e-40
ref|XP_004158345.1| PREDICTED: methyl-CpG-binding domain-contain...   169   3e-40
ref|XP_002525350.1| DNA binding protein, putative [Ricinus commu...   165   7e-39

>emb|CBI34941.3| unnamed protein product [Vitis vinifera]
          Length = 1907

 Score =  202 bits (513), Expect = 5e-50
 Identities = 105/203 (51%), Positives = 136/203 (66%), Gaps = 8/203 (3%)
 Frame = -2

Query: 590 VNCVKLTDAVSGETCGSASKELSDGLPVQYEDFFVLSVGKIDARPSYHIANRIWPIGYKS 411
           V  VK+T+A   E  G+  ++ ++GLPVQ+EDFFVLS+G++D RPSYH  N++WP+GYKS
Sbjct: 234 VGVVKVTEAAPEENGGTGLQQHNNGLPVQFEDFFVLSLGEVDVRPSYHDVNQLWPVGYKS 293

Query: 410 CWHDKITGSLFICDVLDGGDSGPVFKVKRSSCSVFPIPIGSTVLYEPNIGQPGCQ----- 246
           CWHDK+TGSLF+CDV DGGDSGP+FKVKR +CS  P+P GSTVL  PN+GQ   Q     
Sbjct: 294 CWHDKLTGSLFMCDVSDGGDSGPIFKVKRCACSAIPLPNGSTVLCRPNLGQSNGQDKEKS 353

Query: 245 NEGNSFNRKYTDEDFSVLMMLSEPSPPKEHDILSCF-GSTTFDCSNDHHQKTC--SNPRD 75
           N+  S +  Y DED S+  +L++PSPP E+DILSC   S+   C            N   
Sbjct: 354 NDMISLSMDY-DEDGSLQTLLADPSPPMENDILSCIRSSSNGSCCVQTLNSLLLEDNSLH 412

Query: 74  EKSWNTLSDNFLWADEIGEFSVE 6
           E S   LSD+    DEIGEFS++
Sbjct: 413 ESSGEFLSDHSRLKDEIGEFSLQ 435


>ref|XP_002274643.2| PREDICTED: methyl-CpG-binding domain-containing protein 9-like
           [Vitis vinifera]
          Length = 2164

 Score =  193 bits (490), Expect = 2e-47
 Identities = 91/159 (57%), Positives = 120/159 (75%), Gaps = 5/159 (3%)
 Frame = -2

Query: 587 NCVKLTDAVSGETCGSASKELSDGLPVQYEDFFVLSVGKIDARPSYHIANRIWPIGYKSC 408
           N VK+T+A   E  G+  ++ ++GLPVQ+EDFFVLS+G++D RPSYH  N++WP+GYKSC
Sbjct: 372 NSVKVTEAAPEENGGTGLQQHNNGLPVQFEDFFVLSLGEVDVRPSYHDVNQLWPVGYKSC 431

Query: 407 WHDKITGSLFICDVLDGGDSGPVFKVKRSSCSVFPIPIGSTVLYEPNIGQPGCQ-----N 243
           WHDK+TGSLF+CDV DGGDSGP+FKVKR +CS  P+P GSTVL  PN+GQ   Q     N
Sbjct: 432 WHDKLTGSLFMCDVSDGGDSGPIFKVKRCACSAIPLPNGSTVLCRPNLGQSNGQDKEKSN 491

Query: 242 EGNSFNRKYTDEDFSVLMMLSEPSPPKEHDILSCFGSTT 126
           +  S +  Y DED S+  +L++PSPP E+DILSC  S++
Sbjct: 492 DMISLSMDY-DEDGSLQTLLADPSPPMENDILSCIRSSS 529


>ref|XP_002517349.1| DNA binding protein, putative [Ricinus communis]
           gi|223543360|gb|EEF44891.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 2145

 Score =  170 bits (431), Expect = 2e-40
 Identities = 92/187 (49%), Positives = 119/187 (63%), Gaps = 21/187 (11%)
 Frame = -2

Query: 578 KLTDAVSGETCGSASKELSDGLPVQYEDFFVLSVGKIDARPSYHIANRIWPIGYKSCWHD 399
           K+T+A   E   + S    +GLP+Q+EDFFV+S+GKID RPSYH    IWP+GY+SCWHD
Sbjct: 390 KVTEANMEEEDIAKSLPSDEGLPLQFEDFFVISLGKIDGRPSYHGPQLIWPVGYRSCWHD 449

Query: 398 KITGSLFICDVLDGGDSGPVFKVKRSSCSVFPIPIGSTVLYEPNIGQPGCQNEGNSFNRK 219
           ++TGSLFIC+VLDGGDSGP+FKV+R SCS  PIP+GST+LY  N  Q   QN    +N  
Sbjct: 450 RVTGSLFICEVLDGGDSGPIFKVRRFSCSSIPIPVGSTILYRRNPYQFAGQN-SKEYNDV 508

Query: 218 YT-----DEDFSVLMMLSEPSPPKEHDILSCFGST--------TFDC---SNDHHQ---- 99
                  D D S+ M+L++ SPP E DI++C   T        T DC   S+ H+     
Sbjct: 509 INYDMDRDNDGSIEMILADSSPPTEDDIMTCLSYTSKKVCDVRTSDCLQRSSLHNSFASL 568

Query: 98  -KTCSNP 81
            K CS+P
Sbjct: 569 AKFCSSP 575


>ref|XP_004158345.1| PREDICTED: methyl-CpG-binding domain-containing protein 9-like
            [Cucumis sativus]
          Length = 1028

 Score =  169 bits (429), Expect = 3e-40
 Identities = 95/204 (46%), Positives = 126/204 (61%), Gaps = 8/204 (3%)
 Frame = -2

Query: 590  VNCVKLTDAVSGETCGSASKELSDGLPVQYEDFFVLSVGKIDARPSYHIANRIWPIGYKS 411
            VN     +AV+ E  GS S +  +G P+Q+EDFFVLS+G+IDARPSYH   R++P+G++S
Sbjct: 494  VNLENSEEAVAEENGGSISSQCYEGFPLQFEDFFVLSLGEIDARPSYHEVTRVYPVGFRS 553

Query: 410  CWHDKITGSLFICDVLDGGDSGPVFKVKRSSCSVFPIPIGSTVLYEPNIGQPGCQNEGNS 231
            CWHDK+TGS+FI +VLDGGDSGP+FKV+R  CS FPIP+GSTVL +        ++E  S
Sbjct: 554  CWHDKVTGSIFINEVLDGGDSGPLFKVRRCPCSAFPIPVGSTVLSKG-------KSENFS 606

Query: 230  FNRKYTD------EDFSVLMMLSEPSPPKEHDILSCFGSTTFDCSNDHHQKTCSNPRDE- 72
              ++  D       D ++  + S+  PP E DILSC G  +    N H Q    +     
Sbjct: 607  IEQQKEDGLINNSNDDNLQTIFSDVCPPNEDDILSCLGVCSDRDFNVHMQNGLHDEAGSI 666

Query: 71   -KSWNTLSDNFLWADEIGEFSVEE 3
             KS   LSD     DEIGE SVE+
Sbjct: 667  GKS-GDLSDYQYLKDEIGEISVED 689


>ref|XP_002525350.1| DNA binding protein, putative [Ricinus communis]
           gi|223535313|gb|EEF36988.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 1794

 Score =  165 bits (417), Expect = 7e-39
 Identities = 89/187 (47%), Positives = 115/187 (61%), Gaps = 10/187 (5%)
 Frame = -2

Query: 536 SKELSDGLPVQYEDFFVLSVGKIDARPSYHIANRIWPIGYKSCWHDKITGSLFICDVLDG 357
           S   +DG PVQ+EDF+VLS G+ID RPSYH  ++IWP+GYKS WHDKITGSLF+CD+ DG
Sbjct: 57  SANTTDGFPVQFEDFYVLSAGEIDPRPSYHCTSQIWPVGYKSSWHDKITGSLFVCDISDG 116

Query: 356 GDSGPVFKVKRSSCSVFPIPIGSTVLYEPNIGQPGCQNEGNSFNRKYTDEDFSVLMMLSE 177
           GD GP+FKV+R  CS  P PIGST+L+ P  G    +++  S      +ED  V M+LS+
Sbjct: 117 GDCGPIFKVQRYPCSTTPFPIGSTILFRPGFGTDNKKSDSTSHTD--NNEDIDVQMILSD 174

Query: 176 PSPPKEHDILSCFGSTTFDCSNDHHQKTCSNPRD--EKSWNTLSDNF--------LWADE 27
            SPP     LS    T+FD      + + S P D   K+ N++S N            D+
Sbjct: 175 HSPPHLDFKLSTDVGTSFD------EISNSQPTDGLGKNLNSISRNLGKFSSANRRIGDD 228

Query: 26  IGEFSVE 6
           IGEF VE
Sbjct: 229 IGEFLVE 235


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