BLASTX nr result

ID: Panax21_contig00018686 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00018686
         (974 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276063.2| PREDICTED: glycine-rich RNA-binding protein ...   175   2e-41
ref|XP_002309412.1| predicted protein [Populus trichocarpa] gi|2...   168   2e-39
ref|NP_001238370.1| uncharacterized protein LOC100527079 [Glycin...   163   7e-38
ref|XP_004149190.1| PREDICTED: glycine-rich RNA-binding protein ...   161   2e-37
ref|XP_002530529.1| RNA binding protein, putative [Ricinus commu...   160   6e-37

>ref|XP_002276063.2| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
           [Vitis vinifera] gi|297740158|emb|CBI30340.3| unnamed
           protein product [Vitis vinifera]
          Length = 133

 Score =  175 bits (443), Expect = 2e-41
 Identities = 87/103 (84%), Positives = 91/103 (88%)
 Frame = -2

Query: 760 RGIASKLFVGGLSFYTTENGLSEAFSQYGQVIEAHIVMDRVSDRSKGFGFVTFASEDEAE 581
           RGIASKLFVGGLSFYTTE GLSE FSQYGQV+EA IVMDRVSDRSKGFGFVTFASE+EA+
Sbjct: 30  RGIASKLFVGGLSFYTTEKGLSEHFSQYGQVVEAKIVMDRVSDRSKGFGFVTFASEEEAQ 89

Query: 580 KAITEMNGKPLNGRVIFVDRAKPRTGFDGGMPIARGPPEPAGD 452
           KA TEM+GK LNGR IFVD AKPR  F GGMPIARGPPEP  D
Sbjct: 90  KARTEMDGKELNGRTIFVDYAKPRADFGGGMPIARGPPEPTAD 132


>ref|XP_002309412.1| predicted protein [Populus trichocarpa] gi|222855388|gb|EEE92935.1|
           predicted protein [Populus trichocarpa]
          Length = 139

 Score =  168 bits (425), Expect = 2e-39
 Identities = 91/149 (61%), Positives = 106/149 (71%), Gaps = 5/149 (3%)
 Frame = -2

Query: 892 MAAFIRRVCSKKT-----TRQLSVSQPNPNFXXXXXXXXXXXXXXXLFRRGIASKLFVGG 728
           MAA +RR+  +K+      R   V+ P   F                ++RGI +KLFVGG
Sbjct: 1   MAAALRRIAGEKSFMLSSIRAKLVAAPTALFI---------------WQRGITTKLFVGG 45

Query: 727 LSFYTTENGLSEAFSQYGQVIEAHIVMDRVSDRSKGFGFVTFASEDEAEKAITEMNGKPL 548
           LS YTTENGLSEAFSQYGQV+EA IVMDR  DRSKGFGFVT+ASEDEA+KA+ EMNGK L
Sbjct: 46  LSIYTTENGLSEAFSQYGQVVEAKIVMDRALDRSKGFGFVTYASEDEAQKALDEMNGKAL 105

Query: 547 NGRVIFVDRAKPRTGFDGGMPIARGPPEP 461
           NGRVI+VD AK +T F GG+PIARGPPEP
Sbjct: 106 NGRVIYVDYAKLKTNFGGGIPIARGPPEP 134


>ref|NP_001238370.1| uncharacterized protein LOC100527079 [Glycine max]
           gi|255631508|gb|ACU16121.1| unknown [Glycine max]
          Length = 130

 Score =  163 bits (412), Expect = 7e-38
 Identities = 83/102 (81%), Positives = 86/102 (84%)
 Frame = -2

Query: 766 FRRGIASKLFVGGLSFYTTENGLSEAFSQYGQVIEAHIVMDRVSDRSKGFGFVTFASEDE 587
           FRRGIA KLFVGGLSFYTTEN LSEAFS YGQVIEA IV DRVSDRSKGFGFVTFAS+DE
Sbjct: 23  FRRGIAYKLFVGGLSFYTTENALSEAFSNYGQVIEAKIVTDRVSDRSKGFGFVTFASQDE 82

Query: 586 AEKAITEMNGKPLNGRVIFVDRAKPRTGFDGGMPIARGPPEP 461
           AE AI +M GK LNGRVIFVD AKP     G +PIARGPPEP
Sbjct: 83  AENAIEDMKGKTLNGRVIFVDYAKPNINTRGEIPIARGPPEP 124


>ref|XP_004149190.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
           [Cucumis sativus]
          Length = 134

 Score =  161 bits (408), Expect = 2e-37
 Identities = 80/104 (76%), Positives = 90/104 (86%)
 Frame = -2

Query: 760 RGIASKLFVGGLSFYTTENGLSEAFSQYGQVIEAHIVMDRVSDRSKGFGFVTFASEDEAE 581
           RGIA+KLFVGGLS+YTT+ GLSEAFSQYGQVIEA +VMDRVSD+SKGFGFVTFAS DEA 
Sbjct: 31  RGIATKLFVGGLSYYTTDKGLSEAFSQYGQVIEATVVMDRVSDKSKGFGFVTFASLDEAH 90

Query: 580 KAITEMNGKPLNGRVIFVDRAKPRTGFDGGMPIARGPPEPAGDQ 449
            A++EMNGKPLNGRVIFV+ AKP T   G +PIARGPPE   D+
Sbjct: 91  TALSEMNGKPLNGRVIFVNYAKPTTSSRGAIPIARGPPEEKTDK 134


>ref|XP_002530529.1| RNA binding protein, putative [Ricinus communis]
           gi|223529933|gb|EEF31861.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 127

 Score =  160 bits (404), Expect = 6e-37
 Identities = 79/101 (78%), Positives = 88/101 (87%)
 Frame = -2

Query: 760 RGIASKLFVGGLSFYTTENGLSEAFSQYGQVIEAHIVMDRVSDRSKGFGFVTFASEDEAE 581
           RGIA+KLFVGGLSFYTT+ GL+EAFSQYGQV+EA IV DRV DRSKGFGFVTFASEDEA 
Sbjct: 27  RGIATKLFVGGLSFYTTDKGLTEAFSQYGQVVEATIVSDRVLDRSKGFGFVTFASEDEAH 86

Query: 580 KAITEMNGKPLNGRVIFVDRAKPRTGFDGGMPIARGPPEPA 458
            A++EMNGK LNGRVI+VD AKPRT     +PIARGPPEP+
Sbjct: 87  NALSEMNGKTLNGRVIYVDYAKPRTDSRNEVPIARGPPEPS 127


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