BLASTX nr result

ID: Panax21_contig00018667 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00018667
         (2571 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2...   129   4e-27
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   129   4e-27
ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...   127   1e-26
ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|2...   127   2e-26
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript...   119   4e-24

>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
            predicted protein [Populus trichocarpa]
          Length = 1386

 Score =  129 bits (324), Expect = 4e-27
 Identities = 71/252 (28%), Positives = 121/252 (48%), Gaps = 1/252 (0%)
 Frame = +3

Query: 3    GNGESTSLWFDPWLXXXXXXXXXXXXXXXXXGLGPNAKVSDIIRDSSWHLPSSNHNDFIV 182
            G+G +TSLWFD W                  G+  NAKV+ +I++S W  P++    +  
Sbjct: 1109 GDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHP 1168

Query: 183  FRDSFDLSRLCNSSRPDVILWDTANSNEVKASTLWSSIRQVGVTVLWDKLVWHKALIPRY 362
              ++   +      + D I+W  + ++       W  +R+    V W  +VW K  +PR+
Sbjct: 1169 IIEAIPSNSNPKMGQKDEIVWLDSPNHRFLVKVAWEHLRRHRQMVEWHDIVWFKNAVPRH 1228

Query: 363  SFTLWLAFHHGLRTMDRLLSFGMLVNPSCILCSSHSETFDNLFFQCDYSFRVLLSVIRQC 542
            SF LW+A    L T D+L  FG+     C LC  ++E  ++LFF+C Y+  +   V  +C
Sbjct: 1229 SFLLWMAVQQKLTTQDKLYRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRC 1288

Query: 543  GWRGFSRSWSS-LTGYLIHYSNSSFHHRFLHLGFAAVVYRIWNERNARVFSHQFCSARNL 719
                 ++ W   +    + +   SF +    L FAA VY +W ERNAR+F+    +   +
Sbjct: 1289 DIPRMTKGWDEWIRWATVSWHGKSFVNFSRKLSFAATVYHVWQERNARIFAGMSRTPNLV 1348

Query: 720  VSDILHLLKCKL 755
            ++ I  +++ KL
Sbjct: 1349 LNQIECIIRDKL 1360


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score =  129 bits (324), Expect = 4e-27
 Identities = 70/252 (27%), Positives = 121/252 (48%), Gaps = 1/252 (0%)
 Frame = +3

Query: 3   GNGESTSLWFDPWLXXXXXXXXXXXXXXXXXGLGPNAKVSDIIRDSSWHLPSSNHNDFIV 182
           G+G +TSLWFD W                  G+  NAKV+ +I++S W  P++    +  
Sbjct: 236 GDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHP 295

Query: 183 FRDSFDLSRLCNSSRPDVILWDTANSNEVKASTLWSSIRQVGVTVLWDKLVWHKALIPRY 362
             ++   +      + D ++W  + ++       W  +R+    V W  +VW K  +PR+
Sbjct: 296 IIEAIPSNSNPKMGQKDELVWLDSPNHRFSVKVAWEQLRRHRQMVEWHDIVWFKNAVPRH 355

Query: 363 SFTLWLAFHHGLRTMDRLLSFGMLVNPSCILCSSHSETFDNLFFQCDYSFRVLLSVIRQC 542
           SF LW+A    L T D+L  FG+     C LC  ++E  ++LFF+C Y+  +   V  +C
Sbjct: 356 SFLLWMAVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRC 415

Query: 543 GWRGFSRSWSS-LTGYLIHYSNSSFHHRFLHLGFAAVVYRIWNERNARVFSHQFCSARNL 719
                ++ W   +    + +   SF +    L FAA VY +W ERNAR+F+    +   +
Sbjct: 416 DIPRMTKGWDEWIRWATVSWHGKSFVNFSCKLSFAATVYHVWQERNARIFAGMSRTPNLV 475

Query: 720 VSDILHLLKCKL 755
           ++ I  +++ KL
Sbjct: 476 LNQIECIIRDKL 487


>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
            predicted protein [Populus trichocarpa]
          Length = 1046

 Score =  127 bits (320), Expect = 1e-26
 Identities = 70/252 (27%), Positives = 120/252 (47%), Gaps = 1/252 (0%)
 Frame = +3

Query: 3    GNGESTSLWFDPWLXXXXXXXXXXXXXXXXXGLGPNAKVSDIIRDSSWHLPSSNHNDFIV 182
            G+G +TSLWFD W                  G+  NAKV+ +I++S W  P++    +  
Sbjct: 769  GDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHP 828

Query: 183  FRDSFDLSRLCNSSRPDVILWDTANSNEVKASTLWSSIRQVGVTVLWDKLVWHKALIPRY 362
              ++   +      + D I+W  + ++       W  +R+    V W  +VW K  +PR+
Sbjct: 829  IIEAIPSNSNPKMGQKDEIIWLDSPNHRFSVKVAWEQLRRHRQLVEWHDIVWFKNAVPRH 888

Query: 363  SFTLWLAFHHGLRTMDRLLSFGMLVNPSCILCSSHSETFDNLFFQCDYSFRVLLSVIRQC 542
            SF LW+     L T D+L  FG+     C LC  ++E  ++LFF+C Y+  +   V  +C
Sbjct: 889  SFLLWMVVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRC 948

Query: 543  GWRGFSRSWSS-LTGYLIHYSNSSFHHRFLHLGFAAVVYRIWNERNARVFSHQFCSARNL 719
                 ++ W   +    + +   SF +    L FAA VY +W ERNAR+F+    ++  +
Sbjct: 949  DIPRMTKGWDEWIRWATVSWHGKSFINFSRKLSFAATVYHVWQERNARIFAGLSRTSNLV 1008

Query: 720  VSDILHLLKCKL 755
             + I  +++ KL
Sbjct: 1009 FNQIECIIRDKL 1020


>ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|222849970|gb|EEE87517.1|
           predicted protein [Populus trichocarpa]
          Length = 331

 Score =  127 bits (318), Expect = 2e-26
 Identities = 70/252 (27%), Positives = 120/252 (47%), Gaps = 1/252 (0%)
 Frame = +3

Query: 3   GNGESTSLWFDPWLXXXXXXXXXXXXXXXXXGLGPNAKVSDIIRDSSWHLPSSNHNDFIV 182
           G+G +TSLWFD W                  G+  NAKV+ +I++S W  P++    +  
Sbjct: 54  GDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHP 113

Query: 183 FRDSFDLSRLCNSSRPDVILWDTANSNEVKASTLWSSIRQVGVTVLWDKLVWHKALIPRY 362
             ++   +      + D I+W  + ++       W  +R+    V W  +VW K  +PR+
Sbjct: 114 IIEAIPSNSNPKMGQKDEIVWLDSPNHRFSVKVAWEQLRRHRHMVEWHDIVWFKNAVPRH 173

Query: 363 SFTLWLAFHHGLRTMDRLLSFGMLVNPSCILCSSHSETFDNLFFQCDYSFRVLLSVIRQC 542
           SF LW+     L T D+L  FG+     C LC  ++E  ++LFF+C Y+  +   V  +C
Sbjct: 174 SFLLWMVVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIWWDVCDRC 233

Query: 543 GWRGFSRSWSS-LTGYLIHYSNSSFHHRFLHLGFAAVVYRIWNERNARVFSHQFCSARNL 719
                ++ W   +    + +   SF +    L FAA VY +W ERNAR+F+    ++  +
Sbjct: 234 DIPRMTKGWDEWIRWATVSWHGKSFVNFSRKLSFAATVYHVWQERNARIFAGLSRTSNLV 293

Query: 720 VSDILHLLKCKL 755
            + I  +++ KL
Sbjct: 294 FNQIECIIRDKL 305


>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 295

 Score =  119 bits (298), Expect = 4e-24
 Identities = 73/251 (29%), Positives = 117/251 (46%), Gaps = 12/251 (4%)
 Frame = +3

Query: 3   GNGESTSLWFDPWLXXXXXXXXXXXXXXXXXGLGPNAKVSDIIRDSSWHLPSSNHNDFIV 182
           GNGES S W+D W                   +  +A+V +  R+  W LP++  ++  +
Sbjct: 17  GNGESASFWYDAWTDFGQLLTFLGAAGPRQLRIRQDARVVEASRNGDWFLPAARSDNSQL 76

Query: 183 FRDSFDLSRLCNSSR-PDVILWDTANSNEVKAST---LWSSIRQVGVTVLWDKLVWHKAL 350
           F  +  ++ + + SR  D  LW  A  + + + +    W  IR    TV W K+VW K  
Sbjct: 77  FLAALTMAPVPHESRGQDSFLWRNAAGSYLPSFSSRDTWEQIRVHSPTVPWAKVVWFKEY 136

Query: 351 IPRYSFTLWLAFHHGLRTMDRLLSFGMLVNPSCILCSSHSETFDNLFFQCDYSFRVLLSV 530
           IPR+S   W++F   L T DRL  +GM +  S +LCS+  ET  +LFF+C +S  +    
Sbjct: 137 IPRFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLAI---- 192

Query: 531 IRQCGWRGFSRSW--------SSLTGYLIHYSNSSFHHRFLHLGFAAVVYRIWNERNARV 686
                W  F+  +         + + +++     S     L L   + VY +W ERNAR+
Sbjct: 193 -----WEFFASKFRPSPPFGLPAASSWILQLPLRSHSTTILKLLLQSAVYHVWKERNARI 247

Query: 687 FSHQFCSARNL 719
           F+    SA +L
Sbjct: 248 FTSISSSASSL 258


Top