BLASTX nr result

ID: Panax21_contig00018653 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00018653
         (599 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279124.2| PREDICTED: tryptophan synthase beta chain 2 ...   239   3e-61
emb|CBI16881.3| unnamed protein product [Vitis vinifera]              239   3e-61
ref|XP_002329254.1| predicted protein [Populus trichocarpa] gi|2...   232   4e-59
ref|XP_003541227.1| PREDICTED: tryptophan synthase beta chain 2-...   226   2e-57
ref|NP_198669.1| tryptophan synthase beta chain [Arabidopsis tha...   221   7e-56

>ref|XP_002279124.2| PREDICTED: tryptophan synthase beta chain 2 [Vitis vinifera]
          Length = 483

 Score =  239 bits (609), Expect = 3e-61
 Identities = 112/123 (91%), Positives = 121/123 (98%)
 Frame = -1

Query: 599 IPDPIHAGGLRYHGMAPLISHVHELGFMEALAIPQIECFRGAIQFARTEGLIPAPEPTHA 420
           +PDPIHAGGLRYHGMAPL+SHV+ELGFMEA++IPQIECF+GAIQFARTEGLIPAPEPTHA
Sbjct: 359 VPDPIHAGGLRYHGMAPLLSHVYELGFMEAISIPQIECFQGAIQFARTEGLIPAPEPTHA 418

Query: 419 IAATIREALHCKETGESKVILMAMCGHGHFDLPAYEKYLQGNMVDLSFSEEKIQASLANI 240
           IAATIREALHC+ETGESKVIL AMCGHGHFDLPAYEKYLQGNMVDLSF EEKI+ASLANI
Sbjct: 419 IAATIREALHCRETGESKVILTAMCGHGHFDLPAYEKYLQGNMVDLSFEEEKIKASLANI 478

Query: 239 PRV 231
           P+V
Sbjct: 479 PQV 481


>emb|CBI16881.3| unnamed protein product [Vitis vinifera]
          Length = 495

 Score =  239 bits (609), Expect = 3e-61
 Identities = 112/123 (91%), Positives = 121/123 (98%)
 Frame = -1

Query: 599 IPDPIHAGGLRYHGMAPLISHVHELGFMEALAIPQIECFRGAIQFARTEGLIPAPEPTHA 420
           +PDPIHAGGLRYHGMAPL+SHV+ELGFMEA++IPQIECF+GAIQFARTEGLIPAPEPTHA
Sbjct: 371 VPDPIHAGGLRYHGMAPLLSHVYELGFMEAISIPQIECFQGAIQFARTEGLIPAPEPTHA 430

Query: 419 IAATIREALHCKETGESKVILMAMCGHGHFDLPAYEKYLQGNMVDLSFSEEKIQASLANI 240
           IAATIREALHC+ETGESKVIL AMCGHGHFDLPAYEKYLQGNMVDLSF EEKI+ASLANI
Sbjct: 431 IAATIREALHCRETGESKVILTAMCGHGHFDLPAYEKYLQGNMVDLSFEEEKIKASLANI 490

Query: 239 PRV 231
           P+V
Sbjct: 491 PQV 493


>ref|XP_002329254.1| predicted protein [Populus trichocarpa] gi|222870708|gb|EEF07839.1|
           predicted protein [Populus trichocarpa]
          Length = 461

 Score =  232 bits (591), Expect = 4e-59
 Identities = 110/123 (89%), Positives = 118/123 (95%)
 Frame = -1

Query: 599 IPDPIHAGGLRYHGMAPLISHVHELGFMEALAIPQIECFRGAIQFARTEGLIPAPEPTHA 420
           IPDPIHAGGLRYHGMAPLISHV+ELGFMEA+AIPQIECFRGAIQFAR+EGLIPAPEPTHA
Sbjct: 339 IPDPIHAGGLRYHGMAPLISHVYELGFMEAMAIPQIECFRGAIQFARSEGLIPAPEPTHA 398

Query: 419 IAATIREALHCKETGESKVILMAMCGHGHFDLPAYEKYLQGNMVDLSFSEEKIQASLANI 240
           IAATIREALHCKETGE+KVILMAMCGHGHFDL +YEKYLQG MVDLSF EEKI+ASL  +
Sbjct: 399 IAATIREALHCKETGEAKVILMAMCGHGHFDLKSYEKYLQGKMVDLSFDEEKIRASLDKV 458

Query: 239 PRV 231
           P+V
Sbjct: 459 PQV 461


>ref|XP_003541227.1| PREDICTED: tryptophan synthase beta chain 2-like [Glycine max]
          Length = 502

 Score =  226 bits (576), Expect = 2e-57
 Identities = 105/123 (85%), Positives = 118/123 (95%)
 Frame = -1

Query: 599 IPDPIHAGGLRYHGMAPLISHVHELGFMEALAIPQIECFRGAIQFARTEGLIPAPEPTHA 420
           +PDPIHAGGLRYHGMAPLISHV++LG MEA+AIPQ ECF+GAIQFAR+EGLIPAPEPTHA
Sbjct: 378 VPDPIHAGGLRYHGMAPLISHVYDLGLMEAIAIPQTECFQGAIQFARSEGLIPAPEPTHA 437

Query: 419 IAATIREALHCKETGESKVILMAMCGHGHFDLPAYEKYLQGNMVDLSFSEEKIQASLANI 240
           IAATIREA+ C+E GE+KVIL AMCGHGHFDLPAYEKYLQGNMVDLSFSE+K++ASLANI
Sbjct: 438 IAATIREAIRCREAGEAKVILTAMCGHGHFDLPAYEKYLQGNMVDLSFSEDKMKASLANI 497

Query: 239 PRV 231
           P+V
Sbjct: 498 PQV 500


>ref|NP_198669.1| tryptophan synthase beta chain [Arabidopsis thaliana]
           gi|10176821|dbj|BAB10143.1| tryptophan synthase beta
           chain [Arabidopsis thaliana] gi|19699005|gb|AAL91238.1|
           tryptophan synthase beta chain [Arabidopsis thaliana]
           gi|23198094|gb|AAN15574.1| tryptophan synthase beta
           chain [Arabidopsis thaliana] gi|332006948|gb|AED94331.1|
           tryptophan synthase beta chain [Arabidopsis thaliana]
          Length = 506

 Score =  221 bits (563), Expect = 7e-56
 Identities = 103/123 (83%), Positives = 116/123 (94%)
 Frame = -1

Query: 599 IPDPIHAGGLRYHGMAPLISHVHELGFMEALAIPQIECFRGAIQFARTEGLIPAPEPTHA 420
           IPDPIHAGGLRYHGMAPLISHV+E GFMEA++IPQIECF+GAIQFARTEG+IPAPEPTHA
Sbjct: 383 IPDPIHAGGLRYHGMAPLISHVYEQGFMEAISIPQIECFQGAIQFARTEGIIPAPEPTHA 442

Query: 419 IAATIREALHCKETGESKVILMAMCGHGHFDLPAYEKYLQGNMVDLSFSEEKIQASLANI 240
           IAATIREAL CKETGE+KVILMAMCGHGHFDL +Y+KYL+G +VDLSFSEEKI+ SL+ +
Sbjct: 443 IAATIREALRCKETGEAKVILMAMCGHGHFDLTSYDKYLKGELVDLSFSEEKIRESLSKV 502

Query: 239 PRV 231
           P V
Sbjct: 503 PHV 505


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