BLASTX nr result

ID: Panax21_contig00018587 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00018587
         (536 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511495.1| tRNA ligase, putative [Ricinus communis] gi|...   125   5e-27
ref|XP_002318002.1| predicted protein [Populus trichocarpa] gi|2...   123   2e-26
ref|XP_002266347.1| PREDICTED: uncharacterized protein LOC100243...   113   2e-23
emb|CAN79617.1| hypothetical protein VITISV_004978 [Vitis vinifera]   113   2e-23
ref|XP_003522354.1| PREDICTED: uncharacterized protein LOC100816...   100   1e-19

>ref|XP_002511495.1| tRNA ligase, putative [Ricinus communis]
           gi|223550610|gb|EEF52097.1| tRNA ligase, putative
           [Ricinus communis]
          Length = 721

 Score =  125 bits (313), Expect = 5e-27
 Identities = 65/105 (61%), Positives = 83/105 (79%), Gaps = 1/105 (0%)
 Frame = -2

Query: 535 SNASDKHTDVSENAEFSLGSDSEDSEQNDDH-QEMKTKPPAEEKPEADAVEKEQIQPPIQ 359
           SNASD++TD SENAE+S GS  +DS+ NDD  Q+MK   P E+     A EK Q QPP +
Sbjct: 621 SNASDENTDASENAEYSAGS--QDSDDNDDEEQDMKVDRPVEDYN--GATEKVQSQPPEK 676

Query: 358 ADSPDQEKVEGVQKRRFLDLNELAPGSSFDDGPNSMMKDEDTDNY 224
           ++SP Q++VEGV+KRRFLDLNELAPGSSFDDGPN+++KDED D++
Sbjct: 677 SNSPGQDEVEGVRKRRFLDLNELAPGSSFDDGPNTVLKDEDRDDF 721


>ref|XP_002318002.1| predicted protein [Populus trichocarpa] gi|222858675|gb|EEE96222.1|
           predicted protein [Populus trichocarpa]
          Length = 252

 Score =  123 bits (308), Expect = 2e-26
 Identities = 61/104 (58%), Positives = 77/104 (74%)
 Frame = -2

Query: 535 SNASDKHTDVSENAEFSLGSDSEDSEQNDDHQEMKTKPPAEEKPEADAVEKEQIQPPIQA 356
           SNASD+H+D SEN E+S  S S DS+ NDD Q MK   P E   +     +EQ QPP ++
Sbjct: 151 SNASDEHSDASENGEYSARSQSGDSDGNDDEQNMKVDQPVEG--DTVIAREEQNQPPEES 208

Query: 355 DSPDQEKVEGVQKRRFLDLNELAPGSSFDDGPNSMMKDEDTDNY 224
           +SP QE+VEGV+KRRFLDLNELAPGS FDD PN++MKDED +++
Sbjct: 209 NSPVQEEVEGVRKRRFLDLNELAPGSGFDDSPNTVMKDEDRNDF 252


>ref|XP_002266347.1| PREDICTED: uncharacterized protein LOC100243405 [Vitis vinifera]
          Length = 718

 Score =  113 bits (282), Expect = 2e-23
 Identities = 57/102 (55%), Positives = 75/102 (73%)
 Frame = -2

Query: 535 SNASDKHTDVSENAEFSLGSDSEDSEQNDDHQEMKTKPPAEEKPEADAVEKEQIQPPIQA 356
           SNASD  +D S+  E+S+GS  +DS+ NDD QE+K   P E  P+   VEKE  QP  ++
Sbjct: 620 SNASDGRSDESDKVEYSMGS--QDSDDNDDDQELKVDQPVENYPQT--VEKEINQPSEKS 675

Query: 355 DSPDQEKVEGVQKRRFLDLNELAPGSSFDDGPNSMMKDEDTD 230
           +SP Q++ EGV+KRRFLDLNELAPGS FDDGPN+++KD+  D
Sbjct: 676 NSPVQDEAEGVRKRRFLDLNELAPGSGFDDGPNTILKDDTND 717


>emb|CAN79617.1| hypothetical protein VITISV_004978 [Vitis vinifera]
          Length = 757

 Score =  113 bits (282), Expect = 2e-23
 Identities = 57/102 (55%), Positives = 75/102 (73%)
 Frame = -2

Query: 535 SNASDKHTDVSENAEFSLGSDSEDSEQNDDHQEMKTKPPAEEKPEADAVEKEQIQPPIQA 356
           SNASD  +D S+  E+S+GS  +DS+ NDD QE+K   P E  P+   VEKE  QP  ++
Sbjct: 659 SNASDGRSDESDKVEYSMGS--QDSDDNDDDQELKVDQPVENYPQT--VEKEINQPSEKS 714

Query: 355 DSPDQEKVEGVQKRRFLDLNELAPGSSFDDGPNSMMKDEDTD 230
           +SP Q++ EGV+KRRFLDLNELAPGS FDDGPN+++KD+  D
Sbjct: 715 NSPVQDEAEGVRKRRFLDLNELAPGSGFDDGPNTILKDDTND 756


>ref|XP_003522354.1| PREDICTED: uncharacterized protein LOC100816258 [Glycine max]
          Length = 737

 Score =  100 bits (249), Expect = 1e-19
 Identities = 61/113 (53%), Positives = 77/113 (68%), Gaps = 10/113 (8%)
 Frame = -2

Query: 535 SNASDKHTDVSENAEFSLGSDSEDSEQNDDHQEMKTKP------PAEEKPEADAV---EK 383
           SNASD H+D +EN E+ +  +SEDS+ ND+ +E +TK       PAEE  ++ AV   E+
Sbjct: 628 SNASDDHSDPTENGEYMM--ESEDSDSNDE-EEQETKAVEPVTYPAEENNQSPAVGENEQ 684

Query: 382 EQIQPPIQADSPDQEKVEGVQKRRFLDLNELAPGSSFDDGPN-SMMKDEDTDN 227
            Q QPP +A SP QE VEG  KRRFLDLNELAP S FDDGPN + +KDE  D+
Sbjct: 685 NQNQPPEKASSPGQE-VEGTAKRRFLDLNELAPSSGFDDGPNTTTLKDEGNDD 736


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