BLASTX nr result
ID: Panax21_contig00018519
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00018519
(593 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002523609.1| DNA polymerase alpha catalytic subunit, puta... 193 2e-76
gb|AFD98849.1| DNA polymerase alpha catalytic subunit [Solanum l... 186 3e-75
emb|CBI21412.3| unnamed protein product [Vitis vinifera] 179 1e-72
ref|XP_002277947.2| PREDICTED: DNA polymerase alpha catalytic su... 179 1e-72
ref|XP_002310719.1| predicted protein [Populus trichocarpa] gi|2... 173 2e-71
>ref|XP_002523609.1| DNA polymerase alpha catalytic subunit, putative [Ricinus communis]
gi|223537171|gb|EEF38804.1| DNA polymerase alpha
catalytic subunit, putative [Ricinus communis]
Length = 1526
Score = 193 bits (491), Expect(2) = 2e-76
Identities = 87/128 (67%), Positives = 101/128 (78%)
Frame = +1
Query: 1 MVDIDYYLAQQIHPVVSRLCASIQGTSPARLVDCLGLDSSKYQSKSSEAVNNDXXXXXXC 180
M+DIDYYL+QQIHPVVSRLCASIQGTSP RL DCLGLDSSK+Q KSSEA+NND
Sbjct: 1256 MIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQIKSSEAINNDPASSLLF 1315
Query: 181 ALDDGERYQGCGPLVLSCPSCSSTFDCPTVFSSICSSINEKPSEAQTGHDTSNFWCSLHC 360
A++D ERY+ C PL+LSCPSCS TF+CP VF SIC+SI+ P++ Q SNFWC + C
Sbjct: 1316 AVNDEERYRSCEPLLLSCPSCSGTFECPAVFGSICTSISANPTKLQVEESVSNFWCRMRC 1375
Query: 361 PKCPEEDD 384
PKCPEE D
Sbjct: 1376 PKCPEEGD 1383
Score = 118 bits (296), Expect(2) = 2e-76
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +3
Query: 408 IANQVKRQAEGFISTYYKSLMMCDDETCKYTTRSLNLRVIGDSERGTVCPNYPRCNGRLA 587
+ANQVKRQAEGF+S YYK LM CDDETCK+ TRSLNLR+IGDSERGTVCPNYPRCNGRL
Sbjct: 1392 LANQVKRQAEGFVSMYYKGLMTCDDETCKHITRSLNLRLIGDSERGTVCPNYPRCNGRLV 1451
Query: 588 RK 593
RK
Sbjct: 1452 RK 1453
>gb|AFD98849.1| DNA polymerase alpha catalytic subunit [Solanum lycopersicum]
Length = 1561
Score = 186 bits (473), Expect(2) = 3e-75
Identities = 84/128 (65%), Positives = 99/128 (77%)
Frame = +1
Query: 1 MVDIDYYLAQQIHPVVSRLCASIQGTSPARLVDCLGLDSSKYQSKSSEAVNNDXXXXXXC 180
+VDIDYYLAQQIHPV+SRLCASIQGTSPARL DCLGLDSSK+Q+KSSEAVN+D C
Sbjct: 1292 IVDIDYYLAQQIHPVISRLCASIQGTSPARLADCLGLDSSKFQNKSSEAVNDDPSNALLC 1351
Query: 181 ALDDGERYQGCGPLVLSCPSCSSTFDCPTVFSSICSSINEKPSEAQTGHDTSNFWCSLHC 360
DD ER++GC PL L+CPSCS +F+C +FSSICSSI + P++ Q G S W C
Sbjct: 1352 VADDEERFRGCEPLTLTCPSCSCSFECAPIFSSICSSIRQNPADLQVGESASKVWERFSC 1411
Query: 361 PKCPEEDD 384
PKCPEE +
Sbjct: 1412 PKCPEESE 1419
Score = 121 bits (303), Expect(2) = 3e-75
Identities = 55/62 (88%), Positives = 57/62 (91%)
Frame = +3
Query: 408 IANQVKRQAEGFISTYYKSLMMCDDETCKYTTRSLNLRVIGDSERGTVCPNYPRCNGRLA 587
IANQVKRQ EGFISTYYK +MMCDDETC YTTRSLNLRVIGDSERGTVCPNYPRCNG L
Sbjct: 1427 IANQVKRQVEGFISTYYKGVMMCDDETCNYTTRSLNLRVIGDSERGTVCPNYPRCNGHLL 1486
Query: 588 RK 593
R+
Sbjct: 1487 RQ 1488
>emb|CBI21412.3| unnamed protein product [Vitis vinifera]
Length = 1561
Score = 179 bits (454), Expect(2) = 1e-72
Identities = 86/128 (67%), Positives = 101/128 (78%)
Frame = +1
Query: 1 MVDIDYYLAQQIHPVVSRLCASIQGTSPARLVDCLGLDSSKYQSKSSEAVNNDXXXXXXC 180
M+DIDYYLAQQIHPVVSRLCASIQGTSPARL DCLGLDSSK+QS+ SEA+NND
Sbjct: 1294 MIDIDYYLAQQIHPVVSRLCASIQGTSPARLADCLGLDSSKFQSRRSEAINNDFSISLLS 1353
Query: 181 ALDDGERYQGCGPLVLSCPSCSSTFDCPTVFSSICSSINEKPSEAQTGHDTSNFWCSLHC 360
A D ERY+GC L+LSCPSC TFDCPT+F+S+ +SI EK ++ Q +++NFW L C
Sbjct: 1354 A--DEERYRGCEHLILSCPSCFGTFDCPTLFNSVHTSITEKSTQVQV-EESNNFWQRLRC 1410
Query: 361 PKCPEEDD 384
PKCPEE D
Sbjct: 1411 PKCPEEGD 1418
Score = 120 bits (300), Expect(2) = 1e-72
Identities = 55/62 (88%), Positives = 57/62 (91%)
Frame = +3
Query: 408 IANQVKRQAEGFISTYYKSLMMCDDETCKYTTRSLNLRVIGDSERGTVCPNYPRCNGRLA 587
IANQVKRQA+GFIS YYK MMCDDETCK+TT SLNLRVIGDSERGTVCPNYPRCNGRL
Sbjct: 1427 IANQVKRQADGFISMYYKGSMMCDDETCKHTTNSLNLRVIGDSERGTVCPNYPRCNGRLV 1486
Query: 588 RK 593
RK
Sbjct: 1487 RK 1488
>ref|XP_002277947.2| PREDICTED: DNA polymerase alpha catalytic subunit-like [Vitis
vinifera]
Length = 1522
Score = 179 bits (454), Expect(2) = 1e-72
Identities = 86/128 (67%), Positives = 101/128 (78%)
Frame = +1
Query: 1 MVDIDYYLAQQIHPVVSRLCASIQGTSPARLVDCLGLDSSKYQSKSSEAVNNDXXXXXXC 180
M+DIDYYLAQQIHPVVSRLCASIQGTSPARL DCLGLDSSK+QS+ SEA+NND
Sbjct: 1255 MIDIDYYLAQQIHPVVSRLCASIQGTSPARLADCLGLDSSKFQSRRSEAINNDFSISLLS 1314
Query: 181 ALDDGERYQGCGPLVLSCPSCSSTFDCPTVFSSICSSINEKPSEAQTGHDTSNFWCSLHC 360
A D ERY+GC L+LSCPSC TFDCPT+F+S+ +SI EK ++ Q +++NFW L C
Sbjct: 1315 A--DEERYRGCEHLILSCPSCFGTFDCPTLFNSVHTSITEKSTQVQV-EESNNFWQRLRC 1371
Query: 361 PKCPEEDD 384
PKCPEE D
Sbjct: 1372 PKCPEEGD 1379
Score = 120 bits (300), Expect(2) = 1e-72
Identities = 55/62 (88%), Positives = 57/62 (91%)
Frame = +3
Query: 408 IANQVKRQAEGFISTYYKSLMMCDDETCKYTTRSLNLRVIGDSERGTVCPNYPRCNGRLA 587
IANQVKRQA+GFIS YYK MMCDDETCK+TT SLNLRVIGDSERGTVCPNYPRCNGRL
Sbjct: 1388 IANQVKRQADGFISMYYKGSMMCDDETCKHTTNSLNLRVIGDSERGTVCPNYPRCNGRLV 1447
Query: 588 RK 593
RK
Sbjct: 1448 RK 1449
>ref|XP_002310719.1| predicted protein [Populus trichocarpa] gi|222853622|gb|EEE91169.1|
predicted protein [Populus trichocarpa]
Length = 1312
Score = 173 bits (439), Expect(2) = 2e-71
Identities = 85/128 (66%), Positives = 95/128 (74%)
Frame = +1
Query: 1 MVDIDYYLAQQIHPVVSRLCASIQGTSPARLVDCLGLDSSKYQSKSSEAVNNDXXXXXXC 180
++DI+YYL+QQIHPVVSRLCASIQGTSP RL DCLGLDSSK++SKSSE+V +
Sbjct: 1043 IIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFRSKSSESVPSSSLLF--- 1099
Query: 181 ALDDGERYQGCGPLVLSCPSCSSTFDCPTVFSSICSSINEKPSEAQTGHDTSNFWCSLHC 360
A DD ERYQ C PL+LSCPSCS TF CP VF SIC+SI EK Q SNFW L C
Sbjct: 1100 AADDEERYQSCEPLILSCPSCSGTFHCPPVFISICTSILEKSKNPQIEESISNFWHRLCC 1159
Query: 361 PKCPEEDD 384
PKCPEE D
Sbjct: 1160 PKCPEEGD 1167
Score = 121 bits (304), Expect(2) = 2e-71
Identities = 53/62 (85%), Positives = 60/62 (96%)
Frame = +3
Query: 408 IANQVKRQAEGFISTYYKSLMMCDDETCKYTTRSLNLRVIGDSERGTVCPNYPRCNGRLA 587
+ANQVKRQAEGF+STYYK +MMCDDETCK+TTRSLNLR++GDSERGTVCP+YPRCNGRL
Sbjct: 1176 MANQVKRQAEGFVSTYYKGVMMCDDETCKHTTRSLNLRLVGDSERGTVCPSYPRCNGRLV 1235
Query: 588 RK 593
RK
Sbjct: 1236 RK 1237