BLASTX nr result

ID: Panax21_contig00018432 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00018432
         (1480 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003589867.1| hypothetical protein MTR_1g040620 [Medicago ...    68   3e-11
ref|XP_003615596.1| Zinc finger MYM-type protein [Medicago trunc...    63   2e-07
gb|EAY83345.1| hypothetical protein OsI_38563 [Oryza sativa Indi...    54   2e-07
ref|NP_001066915.1| Os12g0528500 [Oryza sativa Japonica Group] g...    52   7e-07
gb|AAF82236.1|AC069143_12 Contains similarity to a transposable ...    60   1e-06

>ref|XP_003589867.1| hypothetical protein MTR_1g040620 [Medicago truncatula]
           gi|355478915|gb|AES60118.1| hypothetical protein
           MTR_1g040620 [Medicago truncatula]
          Length = 665

 Score = 67.8 bits (164), Expect(2) = 3e-11
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = -3

Query: 212 SKYHPNILDEVRRAFMLKGPCQPLKHNFPQTQIGSYLRRFNP 87
           S YHPN  DE+RRA++ KGPCQP +HNFPQ   G++LR+FNP
Sbjct: 55  SCYHPNDRDEIRRAYLAKGPCQPKEHNFPQRPFGTFLRKFNP 96



 Score = 28.1 bits (61), Expect(2) = 3e-11
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = -2

Query: 336 KVDLENLEADPGLRKKIS 283
           +VDLENL A+PG RK++S
Sbjct: 38  EVDLENLPANPGERKQLS 55


>ref|XP_003615596.1| Zinc finger MYM-type protein [Medicago truncatula]
           gi|355516931|gb|AES98554.1| Zinc finger MYM-type protein
           [Medicago truncatula]
          Length = 892

 Score = 63.2 bits (152), Expect = 2e-07
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
 Frame = -3

Query: 212 SKYHPNILDEVRRAFMLKGPCQPLKHNFPQTQIGSYLRRFNPI-IKIFRNWCQVIFRK 42
           S YHPN  + +RRA++ KGPCQP +HNFPQ +IG+ +RRF P     F NW +    K
Sbjct: 152 STYHPNDQEIIRRAYLQKGPCQPNQHNFPQRKIGNSMRRFCPSWFNEFGNWLEYSIEK 209


>gb|EAY83345.1| hypothetical protein OsI_38563 [Oryza sativa Indica Group]
          Length = 221

 Score = 53.5 bits (127), Expect(2) = 2e-07
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = -3

Query: 212 SKYHPNILDEVRRAFMLKGPCQPLKHNFPQTQIGSYLRRFNP-IIKIFRNWCQ 57
           S+Y+ N+ DEVRRA++ +GP Q   H FP+  +   +RRFNP   K F NW +
Sbjct: 25  SQYNVNVCDEVRRAYLQRGPFQTPDHKFPKKDMSGCMRRFNPDWFKTFSNWLE 77



 Score = 29.3 bits (64), Expect(2) = 2e-07
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = -2

Query: 342 DDKVDLENLEADPGLRKKIS 283
           +DKVDL NL AD  LRK IS
Sbjct: 6   EDKVDLSNLPADLALRKPIS 25


>ref|NP_001066915.1| Os12g0528500 [Oryza sativa Japonica Group]
           gi|77556515|gb|ABA99311.1| hypothetical protein
           LOC_Os12g34390 [Oryza sativa Japonica Group]
           gi|113649422|dbj|BAF29934.1| Os12g0528500 [Oryza sativa
           Japonica Group]
          Length = 422

 Score = 51.6 bits (122), Expect(2) = 7e-07
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = -3

Query: 212 SKYHPNILDEVRRAFMLKGPCQPLKHNFPQTQIGSYLRRFNP-IIKIFRNWCQ 57
           S+Y+ N+ DEVRRA++ +GP Q   H F Q  +   +RRFNP   K F NW +
Sbjct: 25  SQYNVNVRDEVRRAYLQRGPFQTPDHKFSQKDMSGCMRRFNPDWFKTFSNWLE 77



 Score = 29.3 bits (64), Expect(2) = 7e-07
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = -2

Query: 342 DDKVDLENLEADPGLRKKIS 283
           +DKVDL NL AD  LRK IS
Sbjct: 6   EDKVDLSNLPADLALRKPIS 25


>gb|AAF82236.1|AC069143_12 Contains similarity to a transposable element Tip100 protein for
           transposase from Ipomoea purpurea gb|4063769 and is a
           member of the transmembrane 4 family PF|00335
           [Arabidopsis thaliana]
          Length = 811

 Score = 60.5 bits (145), Expect = 1e-06
 Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
 Frame = -3

Query: 206 YHPNILDEVRRAFMLKGPCQPLKHNFPQTQIGSYLRRFNP-IIKIFRNWCQVIFRK 42
           YHPN  DEVRR ++++GPCQP  H F Q  IG  LRRFNP    ++ +W +    K
Sbjct: 75  YHPNQRDEVRREYLIRGPCQPRGHKFKQIAIGKVLRRFNPKWFDLYGDWLEYSVEK 130


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