BLASTX nr result

ID: Panax21_contig00018137 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00018137
         (552 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI33172.3| unnamed protein product [Vitis vinifera]              327   8e-88
ref|XP_002282354.1| PREDICTED: splicing factor 3B subunit 3-like...   327   8e-88
emb|CAN64633.1| hypothetical protein VITISV_043788 [Vitis vinifera]   327   8e-88
gb|AEY85032.1| spliceosomal-like protein [Camellia sinensis]          323   1e-86
ref|XP_004147708.1| PREDICTED: splicing factor 3B subunit 3-like...   314   7e-84

>emb|CBI33172.3| unnamed protein product [Vitis vinifera]
          Length = 934

 Score =  327 bits (838), Expect = 8e-88
 Identities = 162/184 (88%), Positives = 171/184 (92%)
 Frame = +1

Query: 1   EYGDVFKVTLEHDNERVSELKIKYFDTIPITASLCVLKSGFLFAASEFGNHGLYQFQAIG 180
           EYGDVFKVTLEH+N+R+SELKIKYFDTIP+T+S+CVLKSGFLFAASEFGNHGLYQFQAIG
Sbjct: 163 EYGDVFKVTLEHENDRISELKIKYFDTIPVTSSMCVLKSGFLFAASEFGNHGLYQFQAIG 222

Query: 181 DDPDVXXXXXXXXXXXXGFQPVFFQPRGLKNLVRIDQVESLMPIMDMKVTNLFEEETPQI 360
           DD DV            GFQPVFFQPRGLKNLVRIDQVESLMPIMDMKV+NLFEEETPQI
Sbjct: 223 DDADVESSSASLMETEEGFQPVFFQPRGLKNLVRIDQVESLMPIMDMKVSNLFEEETPQI 282

Query: 361 FSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANATL 540
           F+LCGRGPRSS+RILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANATL
Sbjct: 283 FALCGRGPRSSIRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANATL 342

Query: 541 VLSI 552
           VLSI
Sbjct: 343 VLSI 346


>ref|XP_002282354.1| PREDICTED: splicing factor 3B subunit 3-like [Vitis vinifera]
          Length = 1214

 Score =  327 bits (838), Expect = 8e-88
 Identities = 162/184 (88%), Positives = 171/184 (92%)
 Frame = +1

Query: 1   EYGDVFKVTLEHDNERVSELKIKYFDTIPITASLCVLKSGFLFAASEFGNHGLYQFQAIG 180
           EYGDVFKVTLEH+N+R+SELKIKYFDTIP+T+S+CVLKSGFLFAASEFGNHGLYQFQAIG
Sbjct: 302 EYGDVFKVTLEHENDRISELKIKYFDTIPVTSSMCVLKSGFLFAASEFGNHGLYQFQAIG 361

Query: 181 DDPDVXXXXXXXXXXXXGFQPVFFQPRGLKNLVRIDQVESLMPIMDMKVTNLFEEETPQI 360
           DD DV            GFQPVFFQPRGLKNLVRIDQVESLMPIMDMKV+NLFEEETPQI
Sbjct: 362 DDADVESSSASLMETEEGFQPVFFQPRGLKNLVRIDQVESLMPIMDMKVSNLFEEETPQI 421

Query: 361 FSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANATL 540
           F+LCGRGPRSS+RILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANATL
Sbjct: 422 FALCGRGPRSSIRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANATL 481

Query: 541 VLSI 552
           VLSI
Sbjct: 482 VLSI 485


>emb|CAN64633.1| hypothetical protein VITISV_043788 [Vitis vinifera]
          Length = 1143

 Score =  327 bits (838), Expect = 8e-88
 Identities = 162/184 (88%), Positives = 171/184 (92%)
 Frame = +1

Query: 1   EYGDVFKVTLEHDNERVSELKIKYFDTIPITASLCVLKSGFLFAASEFGNHGLYQFQAIG 180
           EYGDVFKVTLEH+N+R+SELKIKYFDTIP+T+S+CVLKSGFLFAASEFGNHGLYQFQAIG
Sbjct: 284 EYGDVFKVTLEHENDRISELKIKYFDTIPVTSSMCVLKSGFLFAASEFGNHGLYQFQAIG 343

Query: 181 DDPDVXXXXXXXXXXXXGFQPVFFQPRGLKNLVRIDQVESLMPIMDMKVTNLFEEETPQI 360
           DD DV            GFQPVFFQPRGLKNLVRIDQVESLMPIMDMKV+NLFEEETPQI
Sbjct: 344 DDADVESSSASLMETEEGFQPVFFQPRGLKNLVRIDQVESLMPIMDMKVSNLFEEETPQI 403

Query: 361 FSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANATL 540
           F+LCGRGPRSS+RILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANATL
Sbjct: 404 FALCGRGPRSSIRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANATL 463

Query: 541 VLSI 552
           VLSI
Sbjct: 464 VLSI 467


>gb|AEY85032.1| spliceosomal-like protein [Camellia sinensis]
          Length = 1212

 Score =  323 bits (827), Expect = 1e-86
 Identities = 160/184 (86%), Positives = 169/184 (91%)
 Frame = +1

Query: 1   EYGDVFKVTLEHDNERVSELKIKYFDTIPITASLCVLKSGFLFAASEFGNHGLYQFQAIG 180
           EYGD+FKVTL+HDN+RV+EL+IKYFDTIP+TASLCVLKSGFLFAASEFGNH LYQFQAIG
Sbjct: 302 EYGDIFKVTLDHDNDRVTELRIKYFDTIPVTASLCVLKSGFLFAASEFGNHALYQFQAIG 361

Query: 181 DDPDVXXXXXXXXXXXXGFQPVFFQPRGLKNLVRIDQVESLMPIMDMKVTNLFEEETPQI 360
           D+PDV            GFQPVFFQPR LKNLVRIDQVESLMPIMDMK+ NLFEEETPQI
Sbjct: 362 DEPDVESSSATLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPIMDMKIINLFEEETPQI 421

Query: 361 FSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANATL 540
           F+LCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANATL
Sbjct: 422 FTLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANATL 481

Query: 541 VLSI 552
           VLSI
Sbjct: 482 VLSI 485


>ref|XP_004147708.1| PREDICTED: splicing factor 3B subunit 3-like [Cucumis sativus]
           gi|449513493|ref|XP_004164340.1| PREDICTED: splicing
           factor 3B subunit 3-like [Cucumis sativus]
          Length = 1214

 Score =  314 bits (804), Expect = 7e-84
 Identities = 155/184 (84%), Positives = 166/184 (90%)
 Frame = +1

Query: 1   EYGDVFKVTLEHDNERVSELKIKYFDTIPITASLCVLKSGFLFAASEFGNHGLYQFQAIG 180
           EYGD+FKVTLEH+N+ V ELKIKYFDTIP+TAS+CVLKSGFLFAASEFGNH LYQFQAIG
Sbjct: 302 EYGDIFKVTLEHNNDSVKELKIKYFDTIPVTASMCVLKSGFLFAASEFGNHSLYQFQAIG 361

Query: 181 DDPDVXXXXXXXXXXXXGFQPVFFQPRGLKNLVRIDQVESLMPIMDMKVTNLFEEETPQI 360
           +D DV            GFQPVFFQPR LKNL+RIDQVESLMPIMDMK+ NLFEEETPQI
Sbjct: 362 EDADVESSSATLMETEEGFQPVFFQPRRLKNLMRIDQVESLMPIMDMKIINLFEEETPQI 421

Query: 361 FSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANATL 540
           F+LCGRGPRSSLRILRPGLAISEMAVS+LPGVPSAVWTVKKN+NDEFDAYIVVSFANATL
Sbjct: 422 FTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNINDEFDAYIVVSFANATL 481

Query: 541 VLSI 552
           VLSI
Sbjct: 482 VLSI 485


Top