BLASTX nr result

ID: Panax21_contig00018121 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00018121
         (525 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283885.1| PREDICTED: ubiquitin carboxyl-terminal hydro...    92   3e-17
emb|CAN74012.1| hypothetical protein VITISV_003549 [Vitis vinifera]    92   3e-17

>ref|XP_002283885.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 16-like [Vitis
           vinifera]
          Length = 1213

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 21/194 (10%)
 Frame = +2

Query: 5   QSKPGCGDGDAPCXXXXXXXXXXXXXNDSLSEPSTPSSGFWEGTINFGRSRIDAPDECAQ 184
           Q K  C D +  C               S+++PST SSGFWEGT++  R+R  A D+ AQ
Sbjct: 288 QIKSSCSDVETQCRSSSSGLSIKSCNERSVAQPSTASSGFWEGTLDLNRTRNHAQDDSAQ 347

Query: 185 XXXXXXXXXXXXXPKSSLGFSFNLTKDIVPPIAQRGYNTKTVITDDGQTSPT-------- 340
                         +S L FSFNL+   +PP+      +K+ + DD   S          
Sbjct: 348 -SYASGADSNISDSESVLRFSFNLSGSTIPPLHAEVSESKSTVLDDAHPSTLGIKKPIEG 406

Query: 341 -----------IKKHIDEATLSEELCKDDLKYRDSPSLSLKTSTHVDT--CSNSTVLRSR 481
                      IKK I+    SE++    LK+R+SPSL+ ++S  VD+   ++S  L+SR
Sbjct: 407 VASSEKISTLGIKKPIEGVASSEKISTKALKFRNSPSLAFESSNLVDSGPSNDSHKLKSR 466

Query: 482 EIKPASSGAYCARP 523
           E+KP SS    A P
Sbjct: 467 EVKPFSSSVSNAHP 480


>emb|CAN74012.1| hypothetical protein VITISV_003549 [Vitis vinifera]
          Length = 1225

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 63/194 (32%), Positives = 91/194 (46%), Gaps = 21/194 (10%)
 Frame = +2

Query: 5   QSKPGCGDGDAPCXXXXXXXXXXXXXNDSLSEPSTPSSGFWEGTINFGRSRIDAPDECAQ 184
           Q K  C D +  C               S+++PST SSGFWEGT++  R+R  A D+ AQ
Sbjct: 288 QIKSSCSDVETQCRSSSSGLSIKSCNERSVAQPSTASSGFWEGTLDLNRTRNHAQDDSAQ 347

Query: 185 XXXXXXXXXXXXXPKSSLGFSFNLTKDIVPPIAQRGYNTKTVITDDGQTSPT-------- 340
                         +S L FSFNL+   +PP+      +K+ + DD   S          
Sbjct: 348 -SYASGADSNISDSESVLRFSFNLSGSTIPPLHAEVSESKSTVLDDAHPSTLGIKKPIEG 406

Query: 341 -----------IKKHIDEATLSEELCKDDLKYRDSPSLSLKTSTHVDT--CSNSTVLRSR 481
                      IKK I+    SE++    LK+R+SPSL+ ++S  VD+   ++S  L+SR
Sbjct: 407 VASSEKISTLGIKKPIEGVASSEKISTKALKFRNSPSLAFESSNLVDSGPSNDSHKLKSR 466

Query: 482 EIKPASSGAYCARP 523
           E+KP SS    A P
Sbjct: 467 EVKPFSSSVSNAHP 480


Top