BLASTX nr result

ID: Panax21_contig00018100 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00018100
         (383 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAN77868.1| putative heterogeneous nuclear ribonucleoprotein ...   239   2e-61
ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232...   238   3e-61
ref|XP_002526479.1| RNA binding protein, putative [Ricinus commu...   229   1e-58
ref|XP_002302501.1| predicted protein [Populus trichocarpa] gi|2...   229   1e-58
ref|XP_002326849.1| predicted protein [Populus trichocarpa] gi|2...   225   3e-57

>gb|AAN77868.1| putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera]
          Length = 342

 Score =  239 bits (610), Expect = 2e-61
 Identities = 113/127 (88%), Positives = 124/127 (97%)
 Frame = -1

Query: 383 GTEEHAELVDAEEQEHHDIYKERRKRKEFEVFVGGLDKDATEDDLREVFSEVGEVTEVRL 204
           G +EHAE+VDAE++EHH+++KERRKRKEFEVFVGGLDKDATEDDL++VFS+VGEVTEVRL
Sbjct: 3   GLQEHAEMVDAEDEEHHEVFKERRKRKEFEVFVGGLDKDATEDDLKKVFSQVGEVTEVRL 62

Query: 203 MMNPQTKKNKGFAFLRFATVEQAKRACSNLKNPVVNGKQCGVTPSQDSDTLFLGNICKTW 24
           MMNPQTKKNKGFAFLRFATVEQAKRA + LKNPVVNGKQCGVTPSQDSDTLFLGNICKTW
Sbjct: 63  MMNPQTKKNKGFAFLRFATVEQAKRAVTELKNPVVNGKQCGVTPSQDSDTLFLGNICKTW 122

Query: 23  TKEALKE 3
           TKEALKE
Sbjct: 123 TKEALKE 129


>ref|XP_002270340.2| PREDICTED: uncharacterized protein LOC100232913 [Vitis vinifera]
           gi|297734640|emb|CBI16691.3| unnamed protein product
           [Vitis vinifera]
          Length = 812

 Score =  238 bits (608), Expect = 3e-61
 Identities = 113/125 (90%), Positives = 123/125 (98%)
 Frame = -1

Query: 377 EEHAELVDAEEQEHHDIYKERRKRKEFEVFVGGLDKDATEDDLREVFSEVGEVTEVRLMM 198
           +EHAE+VDAE++EHH+++KERRKRKEFEVFVGGLDKDATEDDLR+VFS+VGEVTEVRLMM
Sbjct: 206 QEHAEMVDAEDEEHHEVFKERRKRKEFEVFVGGLDKDATEDDLRKVFSQVGEVTEVRLMM 265

Query: 197 NPQTKKNKGFAFLRFATVEQAKRACSNLKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTK 18
           NPQTKKNKGFAFLRFATVEQAKRA + LKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTK
Sbjct: 266 NPQTKKNKGFAFLRFATVEQAKRAVTELKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTK 325

Query: 17  EALKE 3
           EALKE
Sbjct: 326 EALKE 330


>ref|XP_002526479.1| RNA binding protein, putative [Ricinus communis]
           gi|223534154|gb|EEF35870.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 784

 Score =  229 bits (585), Expect = 1e-58
 Identities = 107/124 (86%), Positives = 121/124 (97%)
 Frame = -1

Query: 374 EHAELVDAEEQEHHDIYKERRKRKEFEVFVGGLDKDATEDDLREVFSEVGEVTEVRLMMN 195
           +HA++V+AEE+EHH+++KERRKRKEFEVFVGGLDKDATEDDLR+VF+ VGEVTEVRLMMN
Sbjct: 188 DHAQVVNAEEEEHHEVFKERRKRKEFEVFVGGLDKDATEDDLRKVFTRVGEVTEVRLMMN 247

Query: 194 PQTKKNKGFAFLRFATVEQAKRACSNLKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTKE 15
           PQTKKNKGFAFLRF+TVEQAK+A + LKNPV+NGKQCGVTPSQDSDTLFLGNICKTWTKE
Sbjct: 248 PQTKKNKGFAFLRFSTVEQAKKAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKE 307

Query: 14  ALKE 3
           ALKE
Sbjct: 308 ALKE 311


>ref|XP_002302501.1| predicted protein [Populus trichocarpa] gi|222844227|gb|EEE81774.1|
           predicted protein [Populus trichocarpa]
          Length = 341

 Score =  229 bits (585), Expect = 1e-58
 Identities = 110/125 (88%), Positives = 119/125 (95%), Gaps = 1/125 (0%)
 Frame = -1

Query: 374 EHAELVDAEEQ-EHHDIYKERRKRKEFEVFVGGLDKDATEDDLREVFSEVGEVTEVRLMM 198
           EHAE+ D EE+ EHH+++KERRKRKEFEVFVGGLDKDATEDDLR++FS VGEVTEVRLMM
Sbjct: 6   EHAEMADVEEEDEHHEVFKERRKRKEFEVFVGGLDKDATEDDLRKIFSRVGEVTEVRLMM 65

Query: 197 NPQTKKNKGFAFLRFATVEQAKRACSNLKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTK 18
           NPQTKKNKGFAFLRFATVEQAKRA + LKNPV+NGKQCGVTPSQDSDTLFLGNICKTWTK
Sbjct: 66  NPQTKKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTK 125

Query: 17  EALKE 3
           EALKE
Sbjct: 126 EALKE 130


>ref|XP_002326849.1| predicted protein [Populus trichocarpa] gi|222835164|gb|EEE73599.1|
           predicted protein [Populus trichocarpa]
          Length = 343

 Score =  225 bits (573), Expect = 3e-57
 Identities = 108/125 (86%), Positives = 117/125 (93%), Gaps = 1/125 (0%)
 Frame = -1

Query: 374 EHAELVDAEEQ-EHHDIYKERRKRKEFEVFVGGLDKDATEDDLREVFSEVGEVTEVRLMM 198
           E AE+ D EE+ EHH+++KERRKRKEFE+FVGGLDKDATEDDLR+VFS VGEVTE RLMM
Sbjct: 6   ERAEMADVEEEDEHHEVFKERRKRKEFEIFVGGLDKDATEDDLRKVFSRVGEVTEARLMM 65

Query: 197 NPQTKKNKGFAFLRFATVEQAKRACSNLKNPVVNGKQCGVTPSQDSDTLFLGNICKTWTK 18
           NPQTKKNKGFAFLRFATVEQAKRA + LKNPV+NGKQCGVTPSQDSDTLFLGNICKTWTK
Sbjct: 66  NPQTKKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTK 125

Query: 17  EALKE 3
           EALKE
Sbjct: 126 EALKE 130


Top