BLASTX nr result
ID: Panax21_contig00017970
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Panax21_contig00017970 (462 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002521433.1| XPA-binding protein, putative [Ricinus commu... 84 2e-14 ref|XP_003545847.1| PREDICTED: pre-mRNA-splicing factor SYF1-lik... 79 4e-13 ref|XP_002305003.1| predicted protein [Populus trichocarpa] gi|2... 76 2e-12 ref|XP_004155654.1| PREDICTED: pre-mRNA-splicing factor SYF1-lik... 75 5e-12 ref|XP_004134724.1| PREDICTED: pre-mRNA-splicing factor SYF1-lik... 75 5e-12 >ref|XP_002521433.1| XPA-binding protein, putative [Ricinus communis] gi|223539332|gb|EEF40923.1| XPA-binding protein, putative [Ricinus communis] Length = 916 Score = 83.6 bits (205), Expect = 2e-14 Identities = 39/52 (75%), Positives = 47/52 (90%) Frame = -3 Query: 460 RLGFVSAGVESQTDGVPKVSANNEDIELPDESDSDDDGRVEITQKDIPEAVY 305 ++GFVSAGVESQ DGV KV+AN EDIELP+ESDS+DD +VEITQKD+P AV+ Sbjct: 822 KVGFVSAGVESQNDGVIKVNANQEDIELPEESDSEDDEKVEITQKDVPSAVF 873 >ref|XP_003545847.1| PREDICTED: pre-mRNA-splicing factor SYF1-like [Glycine max] Length = 918 Score = 79.0 bits (193), Expect = 4e-13 Identities = 42/84 (50%), Positives = 51/84 (60%) Frame = -3 Query: 460 RLGFVSAGVESQTDGVPKVSANNEDIELPDESDSDDDGRVEITQKDIPEAVYXXXXXXXX 281 ++GFVSAGVESQ D K SAN+EDIELP+ESDSDDD ++EI QKD+P AV+ Sbjct: 827 KVGFVSAGVESQCDRGVKTSANHEDIELPEESDSDDDDKIEIAQKDVPSAVFGGLIRKRD 886 Query: 280 XXXXXXXXXXXXXXXXDNHLGALE 209 +N LGALE Sbjct: 887 ENENNGEVDVTKDKDNENRLGALE 910 >ref|XP_002305003.1| predicted protein [Populus trichocarpa] gi|222847967|gb|EEE85514.1| predicted protein [Populus trichocarpa] Length = 908 Score = 76.3 bits (186), Expect = 2e-12 Identities = 35/51 (68%), Positives = 45/51 (88%) Frame = -3 Query: 457 LGFVSAGVESQTDGVPKVSANNEDIELPDESDSDDDGRVEITQKDIPEAVY 305 +GFVSAGV+SQ+DG +V+AN EDIELP+ESDS+DD +VEI QKD+P AV+ Sbjct: 823 VGFVSAGVQSQSDGGMQVTANQEDIELPEESDSEDDEKVEIAQKDVPSAVF 873 >ref|XP_004155654.1| PREDICTED: pre-mRNA-splicing factor SYF1-like [Cucumis sativus] Length = 650 Score = 75.1 bits (183), Expect = 5e-12 Identities = 35/52 (67%), Positives = 44/52 (84%) Frame = -3 Query: 460 RLGFVSAGVESQTDGVPKVSANNEDIELPDESDSDDDGRVEITQKDIPEAVY 305 ++GFVSAGVESQ DG KV+A+ EDIELPDESDS++D VEI QK++P AV+ Sbjct: 560 KVGFVSAGVESQADGELKVTAHQEDIELPDESDSEEDENVEIAQKEVPSAVF 611 >ref|XP_004134724.1| PREDICTED: pre-mRNA-splicing factor SYF1-like [Cucumis sativus] Length = 912 Score = 75.1 bits (183), Expect = 5e-12 Identities = 35/52 (67%), Positives = 44/52 (84%) Frame = -3 Query: 460 RLGFVSAGVESQTDGVPKVSANNEDIELPDESDSDDDGRVEITQKDIPEAVY 305 ++GFVSAGVESQ DG KV+A+ EDIELPDESDS++D VEI QK++P AV+ Sbjct: 826 KVGFVSAGVESQADGELKVTAHQEDIELPDESDSEEDENVEIAQKEVPSAVF 877