BLASTX nr result

ID: Panax21_contig00017970 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00017970
         (462 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521433.1| XPA-binding protein, putative [Ricinus commu...    84   2e-14
ref|XP_003545847.1| PREDICTED: pre-mRNA-splicing factor SYF1-lik...    79   4e-13
ref|XP_002305003.1| predicted protein [Populus trichocarpa] gi|2...    76   2e-12
ref|XP_004155654.1| PREDICTED: pre-mRNA-splicing factor SYF1-lik...    75   5e-12
ref|XP_004134724.1| PREDICTED: pre-mRNA-splicing factor SYF1-lik...    75   5e-12

>ref|XP_002521433.1| XPA-binding protein, putative [Ricinus communis]
           gi|223539332|gb|EEF40923.1| XPA-binding protein,
           putative [Ricinus communis]
          Length = 916

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 39/52 (75%), Positives = 47/52 (90%)
 Frame = -3

Query: 460 RLGFVSAGVESQTDGVPKVSANNEDIELPDESDSDDDGRVEITQKDIPEAVY 305
           ++GFVSAGVESQ DGV KV+AN EDIELP+ESDS+DD +VEITQKD+P AV+
Sbjct: 822 KVGFVSAGVESQNDGVIKVNANQEDIELPEESDSEDDEKVEITQKDVPSAVF 873


>ref|XP_003545847.1| PREDICTED: pre-mRNA-splicing factor SYF1-like [Glycine max]
          Length = 918

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 42/84 (50%), Positives = 51/84 (60%)
 Frame = -3

Query: 460  RLGFVSAGVESQTDGVPKVSANNEDIELPDESDSDDDGRVEITQKDIPEAVYXXXXXXXX 281
            ++GFVSAGVESQ D   K SAN+EDIELP+ESDSDDD ++EI QKD+P AV+        
Sbjct: 827  KVGFVSAGVESQCDRGVKTSANHEDIELPEESDSDDDDKIEIAQKDVPSAVFGGLIRKRD 886

Query: 280  XXXXXXXXXXXXXXXXDNHLGALE 209
                            +N LGALE
Sbjct: 887  ENENNGEVDVTKDKDNENRLGALE 910


>ref|XP_002305003.1| predicted protein [Populus trichocarpa] gi|222847967|gb|EEE85514.1|
           predicted protein [Populus trichocarpa]
          Length = 908

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 35/51 (68%), Positives = 45/51 (88%)
 Frame = -3

Query: 457 LGFVSAGVESQTDGVPKVSANNEDIELPDESDSDDDGRVEITQKDIPEAVY 305
           +GFVSAGV+SQ+DG  +V+AN EDIELP+ESDS+DD +VEI QKD+P AV+
Sbjct: 823 VGFVSAGVQSQSDGGMQVTANQEDIELPEESDSEDDEKVEIAQKDVPSAVF 873


>ref|XP_004155654.1| PREDICTED: pre-mRNA-splicing factor SYF1-like [Cucumis sativus]
          Length = 650

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 35/52 (67%), Positives = 44/52 (84%)
 Frame = -3

Query: 460 RLGFVSAGVESQTDGVPKVSANNEDIELPDESDSDDDGRVEITQKDIPEAVY 305
           ++GFVSAGVESQ DG  KV+A+ EDIELPDESDS++D  VEI QK++P AV+
Sbjct: 560 KVGFVSAGVESQADGELKVTAHQEDIELPDESDSEEDENVEIAQKEVPSAVF 611


>ref|XP_004134724.1| PREDICTED: pre-mRNA-splicing factor SYF1-like [Cucumis sativus]
          Length = 912

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 35/52 (67%), Positives = 44/52 (84%)
 Frame = -3

Query: 460 RLGFVSAGVESQTDGVPKVSANNEDIELPDESDSDDDGRVEITQKDIPEAVY 305
           ++GFVSAGVESQ DG  KV+A+ EDIELPDESDS++D  VEI QK++P AV+
Sbjct: 826 KVGFVSAGVESQADGELKVTAHQEDIELPDESDSEEDENVEIAQKEVPSAVF 877


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