BLASTX nr result

ID: Panax21_contig00017723 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00017723
         (993 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003617008.1| Cellular nucleic acid-binding protein [Medic...    94   4e-17
ref|XP_002875611.1| hypothetical protein ARALYDRAFT_323091 [Arab...    91   6e-16
ref|NP_189945.1| zinc knuckle (CCHC-type) family protein [Arabid...    89   2e-15
emb|CBI24395.3| unnamed protein product [Vitis vinifera]               85   3e-14
emb|CAN73043.1| hypothetical protein VITISV_005152 [Vitis vinifera]    84   5e-14

>ref|XP_003617008.1| Cellular nucleic acid-binding protein [Medicago truncatula]
           gi|355518343|gb|AES99966.1| Cellular nucleic
           acid-binding protein [Medicago truncatula]
          Length = 638

 Score = 94.4 bits (233), Expect = 4e-17
 Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
 Frame = -3

Query: 985 SPSSCYRCGEGGHFARECTSSAKASTRLHGEPNDTESLSSCYKCG-EGHFGRECTNSSKT 809
           +PSSCY+CGE GHFAREC+SS KAS+R   E  D  + SSCY+CG EGHF REC++S K 
Sbjct: 430 TPSSCYKCGEQGHFARECSSSVKASSRWQPENTDPATPSSCYRCGEEGHFSRECSSSVKV 489

Query: 808 PKRKRELSTPKSKHLKQRLNYFEGRSLPRD 719
             +K  LS+ ++   ++   +   RS P D
Sbjct: 490 GNKKHNLSSTETPRSQKENGHMGYRSAPYD 519


>ref|XP_002875611.1| hypothetical protein ARALYDRAFT_323091 [Arabidopsis lyrata subsp.
           lyrata] gi|297321449|gb|EFH51870.1| hypothetical protein
           ARALYDRAFT_323091 [Arabidopsis lyrata subsp. lyrata]
          Length = 556

 Score = 90.5 bits (223), Expect = 6e-16
 Identities = 50/107 (46%), Positives = 59/107 (55%), Gaps = 9/107 (8%)
 Frame = -3

Query: 979 SSCYRCGEGGHFARECTSSAKASTRLHGEPNDTESLSSCYKC-GEGHFGRECTNSSKTPK 803
           S CYRCGE GHFAREC +S+  ST         ES S CY+C G GHF REC NSS+  K
Sbjct: 325 SECYRCGEEGHFARECPNSSSISTS-----QGRESQSLCYRCNGAGHFARECPNSSQVSK 379

Query: 802 RKRELSTPKSKHLKQRLNYFEGRSLPRD--------LYKTHKRDKPQ 686
           R R+ STP  K  K+     E  S P +          KTHK ++PQ
Sbjct: 380 RDRDTSTPSHKSRKKNKENLEHDSTPHESNGKTKKKKKKTHKEEQPQ 426


>ref|NP_189945.1| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
           gi|9967508|emb|CAC05633.1| putative protein [Arabidopsis
           thaliana] gi|20466716|gb|AAM20675.1| putative protein
           [Arabidopsis thaliana] gi|25084296|gb|AAN72214.1|
           putative protein [Arabidopsis thaliana]
           gi|332644290|gb|AEE77811.1| zinc knuckle (CCHC-type)
           family protein [Arabidopsis thaliana]
          Length = 551

 Score = 88.6 bits (218), Expect = 2e-15
 Identities = 51/108 (47%), Positives = 60/108 (55%), Gaps = 10/108 (9%)
 Frame = -3

Query: 979 SSCYRCGEGGHFARECTSSAKASTRLHGEPNDTESLSSCYKC-GEGHFGRECTNSSKTPK 803
           S CYRCGE GHFAREC +S+  ST  HG     ES + CY+C G GHF REC NSS+  K
Sbjct: 325 SECYRCGEEGHFARECPNSSSISTS-HGR----ESQTLCYRCNGSGHFARECPNSSQVSK 379

Query: 802 RKRELSTPKSKHLKQRLNYFEGRSLPRD---------LYKTHKRDKPQ 686
           R RE ST   K  K+     E  S P +           KTHK ++PQ
Sbjct: 380 RDRETSTTSHKSRKKNKENSEHDSTPHESNGKTKKKKKKKTHKEEQPQ 427


>emb|CBI24395.3| unnamed protein product [Vitis vinifera]
          Length = 441

 Score = 84.7 bits (208), Expect = 3e-14
 Identities = 62/198 (31%), Positives = 86/198 (43%), Gaps = 22/198 (11%)
 Frame = -3

Query: 976 SCYRCGEGGHFARECTSSAKASTRLHGEPNDTESLSSCYKCGE-GHFGRECTNSSKTPKR 800
           SCY+CG+ GH    C        RL+ E  D ++ SSCY+CGE GHF REC +S+K  KR
Sbjct: 244 SCYKCGQLGHTGLACA-------RLNAETADVQTPSSCYRCGEQGHFARECKSSTKVSKR 296

Query: 799 KRELSTPKSKHLKQRLNYFEGRSLPRDLYKTHKRDKPQYEGYSFPTRRRELIVGNLL--- 629
             E+ST   + LK+  +    +S P+DL    KR KP YE     T R+    G  +   
Sbjct: 297 YSEVSTQSRRFLKEDKDKLGFKSAPKDLGMGRKRKKPWYEERGNITPRKPKQRGGWITED 356

Query: 628 ----QHQKVKTRNFPIQLVAVMLQILVLL*IFDSFCYKIQLQNDSTFYDGFSTW------ 479
                 +K K +++              +     +      +N   FY   STW      
Sbjct: 357 PGDSPQRKAKVKSWRSPATPTNKNHKRPMLTAGHYTSSQSSKNTQKFYSRNSTWQGSAKA 416

Query: 478 --------RFGCSSSDVM 449
                   RFG SSSD +
Sbjct: 417 SQHRFSASRFGSSSSDAV 434


>emb|CAN73043.1| hypothetical protein VITISV_005152 [Vitis vinifera]
          Length = 513

 Score = 84.0 bits (206), Expect = 5e-14
 Identities = 62/198 (31%), Positives = 86/198 (43%), Gaps = 22/198 (11%)
 Frame = -3

Query: 976 SCYRCGEGGHFARECTSSAKASTRLHGEPNDTESLSSCYKCGE-GHFGRECTNSSKTPKR 800
           SCY+CG+ GH    C        RL+ E  D ++ SSCY+CGE GHF REC +S+K  KR
Sbjct: 316 SCYKCGQLGHTGLACA-------RLNAETADVQTPSSCYRCGEQGHFARECKSSTKXSKR 368

Query: 799 KRELSTPKSKHLKQRLNYFEGRSLPRDLYKTHKRDKPQYEGYSFPTRRRELIVGNLL--- 629
             E+ST   + LK+  +    +S P+DL    KR KP YE     T R+    G  +   
Sbjct: 369 YSEVSTQSRRFLKEDKDKLGFKSAPKDLGMGXKRKKPWYEERGNITPRKPKQRGGWITED 428

Query: 628 ----QHQKVKTRNFPIQLVAVMLQILVLL*IFDSFCYKIQLQNDSTFYDGFSTW------ 479
                 +K K +++              +     +      +N   FY   STW      
Sbjct: 429 PGDSPQRKAKVKSWRSPATPTNKNHKRPMLTAGHYTSSQSSKNTQKFYSRNSTWQGSAKA 488

Query: 478 --------RFGCSSSDVM 449
                   RFG SSSD +
Sbjct: 489 SQHRFSASRFGSSSSDAV 506


Top