BLASTX nr result

ID: Panax21_contig00017707 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00017707
         (696 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274797.2| PREDICTED: uncharacterized protein LOC100251...   113   3e-23
emb|CBI38298.3| unnamed protein product [Vitis vinifera]              113   3e-23
ref|XP_002328215.1| predicted protein [Populus trichocarpa] gi|2...   110   2e-22
ref|XP_004148943.1| PREDICTED: mediator of RNA polymerase II tra...   110   4e-22
ref|XP_002312859.1| predicted protein [Populus trichocarpa] gi|2...   109   6e-22

>ref|XP_002274797.2| PREDICTED: uncharacterized protein LOC100251197 [Vitis vinifera]
          Length = 194

 Score =  113 bits (283), Expect = 3e-23
 Identities = 60/128 (46%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
 Frame = +1

Query: 1   LCVLKEAFQMRETTLVDLAHVEKGIPAEMLKLSGESKDKE-KHKNHKSRDKEKNMD-RKH 174
           L VL+EAFQ+RET  +DL   EKGIP    K   ESKDKE KHK HK RDKEK+ + +KH
Sbjct: 65  LDVLREAFQLRETAPIDLPPAEKGIPTIAGKSKSESKDKERKHKKHKDRDKEKDKEHKKH 124

Query: 175 RHCPKGCNCKKYEEKVSNGHHDFGPENLQKLQEKKRKFEGSDDLSSIQRHQKTELKNKKI 354
           +H       K  E+K  +G HD   ++ +K  EKKRK +G +D++ IQRH+K++ K+ KI
Sbjct: 125 KHRHNRSKEKDKEKKDRSGQHDSAADHSKKHHEKKRKHDGEEDVNDIQRHKKSKHKSSKI 184

Query: 355 NHTGTLRI 378
           +  G +++
Sbjct: 185 DELGAIKV 192


>emb|CBI38298.3| unnamed protein product [Vitis vinifera]
          Length = 204

 Score =  113 bits (283), Expect = 3e-23
 Identities = 60/128 (46%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
 Frame = +1

Query: 1   LCVLKEAFQMRETTLVDLAHVEKGIPAEMLKLSGESKDKE-KHKNHKSRDKEKNMD-RKH 174
           L VL+EAFQ+RET  +DL   EKGIP    K   ESKDKE KHK HK RDKEK+ + +KH
Sbjct: 75  LDVLREAFQLRETAPIDLPPAEKGIPTIAGKSKSESKDKERKHKKHKDRDKEKDKEHKKH 134

Query: 175 RHCPKGCNCKKYEEKVSNGHHDFGPENLQKLQEKKRKFEGSDDLSSIQRHQKTELKNKKI 354
           +H       K  E+K  +G HD   ++ +K  EKKRK +G +D++ IQRH+K++ K+ KI
Sbjct: 135 KHRHNRSKEKDKEKKDRSGQHDSAADHSKKHHEKKRKHDGEEDVNDIQRHKKSKHKSSKI 194

Query: 355 NHTGTLRI 378
           +  G +++
Sbjct: 195 DELGAIKV 202


>ref|XP_002328215.1| predicted protein [Populus trichocarpa] gi|222837730|gb|EEE76095.1|
           predicted protein [Populus trichocarpa]
          Length = 220

 Score =  110 bits (276), Expect = 2e-22
 Identities = 60/134 (44%), Positives = 86/134 (64%), Gaps = 8/134 (5%)
 Frame = +1

Query: 1   LCVLKEAFQMRETTLVDLAHVEKGIPAEMLKLSGESKDKE-KHKNHKSRDKEKNMD---- 165
           L VL+EAFQ++ETT +DL   EKG P    K   ESKDK+ KHK HK RDKEK  +    
Sbjct: 85  LDVLREAFQLKETTPIDLPSAEKGTPTIAGKSKVESKDKDRKHKKHKERDKEKEKEKEHK 144

Query: 166 -RKHRHCPKGCNCKKYEEKVSN--GHHDFGPENLQKLQEKKRKFEGSDDLSSIQRHQKTE 336
            RKHRH  K  +  K +EK  +  GHHD G ++ +K  +KKRK +G +DL+ + +H+K++
Sbjct: 145 KRKHRHKDKDRSKDKDKEKKKDRSGHHDSGADHSKKHHDKKRKHDGDEDLNDVHKHKKSK 204

Query: 337 LKNKKINHTGTLRI 378
            K+ KI+  G +++
Sbjct: 205 HKSSKIDEIGVIKV 218


>ref|XP_004148943.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           19a-like [Cucumis sativus]
           gi|449502064|ref|XP_004161533.1| PREDICTED: mediator of
           RNA polymerase II transcription subunit 19a-like
           [Cucumis sativus]
          Length = 219

 Score =  110 bits (274), Expect = 4e-22
 Identities = 58/128 (45%), Positives = 81/128 (63%), Gaps = 4/128 (3%)
 Frame = +1

Query: 7   VLKEAFQMRETTLVDLAHVEKGIPAEMLKLSGESKDKE-KHKNHKSRDKEKNMDRK---H 174
           +L EAFQ+RET  VDL   EKG+P    K   ESKDK+ KHK HK RDKEK+ + K   H
Sbjct: 90  ILIEAFQLRETGPVDLPSAEKGVPTIPGKSKSESKDKDRKHKKHKDRDKEKDREHKKHKH 149

Query: 175 RHCPKGCNCKKYEEKVSNGHHDFGPENLQKLQEKKRKFEGSDDLSSIQRHQKTELKNKKI 354
           RH  +  +  K ++K  +GH D G ++ +K  EKKRK +G DD++ I RH+K++ K  KI
Sbjct: 150 RHKDRSKDKDKDKKKEKSGHQDSGADHSKKHHEKKRKHDGEDDINDIHRHKKSKHKASKI 209

Query: 355 NHTGTLRI 378
              G +++
Sbjct: 210 EEMGVIKV 217


>ref|XP_002312859.1| predicted protein [Populus trichocarpa] gi|222849267|gb|EEE86814.1|
           predicted protein [Populus trichocarpa]
          Length = 218

 Score =  109 bits (272), Expect = 6e-22
 Identities = 56/132 (42%), Positives = 86/132 (65%), Gaps = 6/132 (4%)
 Frame = +1

Query: 1   LCVLKEAFQMRETTLVDLAHVEKGIPAEMLKLSGESKDKE-KHKNHKSRDKEKNMD---- 165
           L VL+EAFQ++ETT +DL   EKG P    K  GESKDK+ KHK  K RDKEK+ +    
Sbjct: 85  LNVLREAFQLKETTPIDLPSAEKGTPTIAGKSKGESKDKDRKHKKQKDRDKEKDKEHKKH 144

Query: 166 -RKHRHCPKGCNCKKYEEKVSNGHHDFGPENLQKLQEKKRKFEGSDDLSSIQRHQKTELK 342
            R+H+   +  +  K ++K  +GHHD G ++ +K  EKKRK +G +DL+ + +H+K++ K
Sbjct: 145 KRRHKDKDRSKDKDKEKKKDRSGHHDSGADHSKKHHEKKRKHDGDEDLNDVHKHKKSKHK 204

Query: 343 NKKINHTGTLRI 378
           + KI+  G +++
Sbjct: 205 SSKIDEIGVIKV 216


Top