BLASTX nr result

ID: Panax21_contig00017434 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00017434
         (855 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI38550.3| unnamed protein product [Vitis vinifera]              171   3e-40
ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containi...   171   3e-40
emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]   171   3e-40
ref|XP_002325452.1| predicted protein [Populus trichocarpa] gi|2...   161   2e-37
ref|XP_002524030.1| pentatricopeptide repeat-containing protein,...   160   3e-37

>emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score =  171 bits (432), Expect = 3e-40
 Identities = 85/120 (70%), Positives = 101/120 (84%)
 Frame = -3

Query: 853  TKGFVLQASTYNVLISDFAKMGQMNQARELMNEMQLRGVPPSSSTYDILISGWCKLSKQA 674
            TKGFV +  TYNVLIS FAK  +M+QA+ELM EMQ+RG+PP+SSTYDILI GW KLSKQ 
Sbjct: 674  TKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQP 733

Query: 673  ELGWALKKSYKAEAKRLLEEMNEKGFIPCKTTLSFISHTLAQPGMKLDAQRLLDKFYKRK 494
            EL  +LK+SY+AEAKRL EEMNEKGFIPC+ TL+ IS TLA+PG K DAQR+L+K YK+K
Sbjct: 734  ELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKKK 793


>ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
            mitochondrial-like [Vitis vinifera]
          Length = 835

 Score =  171 bits (432), Expect = 3e-40
 Identities = 85/120 (70%), Positives = 101/120 (84%)
 Frame = -3

Query: 853  TKGFVLQASTYNVLISDFAKMGQMNQARELMNEMQLRGVPPSSSTYDILISGWCKLSKQA 674
            TKGFV +  TYNVLIS FAK  +M+QA+ELM EMQ+RG+PP+SSTYDILI GW KLSKQ 
Sbjct: 674  TKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQP 733

Query: 673  ELGWALKKSYKAEAKRLLEEMNEKGFIPCKTTLSFISHTLAQPGMKLDAQRLLDKFYKRK 494
            EL  +LK+SY+AEAKRL EEMNEKGFIPC+ TL+ IS TLA+PG K DAQR+L+K YK+K
Sbjct: 734  ELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKKK 793


>emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score =  171 bits (432), Expect = 3e-40
 Identities = 85/120 (70%), Positives = 101/120 (84%)
 Frame = -3

Query: 853  TKGFVLQASTYNVLISDFAKMGQMNQARELMNEMQLRGVPPSSSTYDILISGWCKLSKQA 674
            TKGFV +  TYNVLIS FAK  +M+QA+ELM EMQ+RG+PP+SSTYDILI GW KLSKQ 
Sbjct: 674  TKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQP 733

Query: 673  ELGWALKKSYKAEAKRLLEEMNEKGFIPCKTTLSFISHTLAQPGMKLDAQRLLDKFYKRK 494
            EL  +LK+SY+AEAKRL EEMNEKGFIPC+ TL+ IS TLA+PG K DAQR+L+K YK+K
Sbjct: 734  ELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKKK 793


>ref|XP_002325452.1| predicted protein [Populus trichocarpa] gi|222862327|gb|EEE99833.1|
            predicted protein [Populus trichocarpa]
          Length = 864

 Score =  161 bits (408), Expect = 2e-37
 Identities = 78/120 (65%), Positives = 95/120 (79%)
 Frame = -3

Query: 853  TKGFVLQASTYNVLISDFAKMGQMNQARELMNEMQLRGVPPSSSTYDILISGWCKLSKQA 674
            TKG V + STYNVLI DFAK+G+M+QAREL+NEMQ+R VPP+SSTYDILI GWC LSKQ 
Sbjct: 743  TKGLVPKTSTYNVLIEDFAKVGKMDQARELLNEMQVRRVPPNSSTYDILICGWCNLSKQP 802

Query: 673  ELGWALKKSYKAEAKRLLEEMNEKGFIPCKTTLSFISHTLAQPGMKLDAQRLLDKFYKRK 494
            EL    KK+Y+ EA+ L  EMNEKGF+PC+ TL+ IS T A+PGM +DA+ +L   YKRK
Sbjct: 803  ELDRISKKTYRTEARTLFAEMNEKGFVPCENTLACISSTFARPGMVVDAKHMLKDMYKRK 862


>ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223536757|gb|EEF38398.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1016

 Score =  160 bits (405), Expect = 3e-37
 Identities = 75/116 (64%), Positives = 96/116 (82%)
 Frame = -3

Query: 850  KGFVLQASTYNVLISDFAKMGQMNQARELMNEMQLRGVPPSSSTYDILISGWCKLSKQAE 671
            +GFV + STYNVLISDFAK+G+M+QAREL+NEMQ+RGVPPSSSTYDILI GWC LSK  +
Sbjct: 826  QGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILICGWCNLSKHPD 885

Query: 670  LGWALKKSYKAEAKRLLEEMNEKGFIPCKTTLSFISHTLAQPGMKLDAQRLLDKFY 503
            L   LKK Y+ +AK L+ EMN+KGF+PCK+T++ IS T A+PG  LDA++LL + +
Sbjct: 886  LDRTLKKIYRTDAKNLITEMNDKGFVPCKSTIACISSTFARPGKMLDAEKLLKEIF 941



 Score = 56.2 bits (134), Expect = 9e-06
 Identities = 36/110 (32%), Positives = 56/110 (50%)
 Frame = -3

Query: 826  TYNVLISDFAKMGQMNQARELMNEMQLRGVPPSSSTYDILISGWCKLSKQAELGWALKKS 647
            TYN+L+      G M +  EL ++M+  G+ P +STYD LISG+ K+             
Sbjct: 764  TYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGN----------- 812

Query: 646  YKAEAKRLLEEMNEKGFIPCKTTLSFISHTLAQPGMKLDAQRLLDKFYKR 497
             K E+ RL  EM  +GF+P  +T + +    A+ G    A+ LL++   R
Sbjct: 813  -KKESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQVR 861


Top