BLASTX nr result
ID: Panax21_contig00016981
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00016981
(398 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI28351.3| unnamed protein product [Vitis vinifera] 117 1e-24
ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containi... 117 1e-24
ref|XP_002523781.1| pentatricopeptide repeat-containing protein,... 110 9e-23
ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containi... 102 4e-20
ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 100 1e-19
>emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 117 bits (293), Expect = 1e-24
Identities = 53/89 (59%), Positives = 71/89 (79%)
Frame = -1
Query: 290 IRLCANLKEVDFARQLHSRVMKSGFESDPNIRTTLTVNYTKCSEMNDTFKLFCTNHRVHN 111
I+LCAN+KE+ FA+QLH +V+K+G + D NI+T L V Y+KCSE++D FKLFC H V N
Sbjct: 301 IKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQN 360
Query: 110 VVTWTAIISGYLKNSDIEQAVKLFCQMSR 24
VV+WTAIISGY++N ++A+ LFCQM R
Sbjct: 361 VVSWTAIISGYVQNGRTDRAMNLFCQMRR 389
Score = 62.0 bits (149), Expect = 5e-08
Identities = 32/87 (36%), Positives = 53/87 (60%)
Frame = -1
Query: 290 IRLCANLKEVDFARQLHSRVMKSGFESDPNIRTTLTVNYTKCSEMNDTFKLFCTNHRVHN 111
+++C L + +Q+H + +K GF D ++ T+L Y K + D ++F RV N
Sbjct: 99 LKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVF-DEMRVKN 157
Query: 110 VVTWTAIISGYLKNSDIEQAVKLFCQM 30
VV+WT++++GY +N EQA+KLF QM
Sbjct: 158 VVSWTSLLAGYRQNGLNEQALKLFSQM 184
>ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 117 bits (293), Expect = 1e-24
Identities = 53/89 (59%), Positives = 71/89 (79%)
Frame = -1
Query: 290 IRLCANLKEVDFARQLHSRVMKSGFESDPNIRTTLTVNYTKCSEMNDTFKLFCTNHRVHN 111
I+LCAN+KE+ FA+QLH +V+K+G + D NI+T L V Y+KCSE++D FKLFC H V N
Sbjct: 301 IKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQN 360
Query: 110 VVTWTAIISGYLKNSDIEQAVKLFCQMSR 24
VV+WTAIISGY++N ++A+ LFCQM R
Sbjct: 361 VVSWTAIISGYVQNGRTDRAMNLFCQMRR 389
Score = 62.0 bits (149), Expect = 5e-08
Identities = 32/87 (36%), Positives = 53/87 (60%)
Frame = -1
Query: 290 IRLCANLKEVDFARQLHSRVMKSGFESDPNIRTTLTVNYTKCSEMNDTFKLFCTNHRVHN 111
+++C L + +Q+H + +K GF D ++ T+L Y K + D ++F RV N
Sbjct: 99 LKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVF-DEMRVKN 157
Query: 110 VVTWTAIISGYLKNSDIEQAVKLFCQM 30
VV+WT++++GY +N EQA+KLF QM
Sbjct: 158 VVSWTSLLAGYRQNGLNEQALKLFSQM 184
Score = 60.8 bits (146), Expect = 1e-07
Identities = 27/75 (36%), Positives = 51/75 (68%)
Frame = -1
Query: 248 QLHSRVMKSGFESDPNIRTTLTVNYTKCSEMNDTFKLFCTNHRVHNVVTWTAIISGYLKN 69
Q+H+ V+K+ +E+ P++ T L+ +Y+K + N+ K+F ++V W+A++SGY +
Sbjct: 413 QIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDE-KDIVAWSAMLSGYAQM 471
Query: 68 SDIEQAVKLFCQMSR 24
DIE AVK+F Q+++
Sbjct: 472 GDIEGAVKIFLQLAK 486
>ref|XP_002523781.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536869|gb|EEF38507.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 661
Score = 110 bits (276), Expect = 9e-23
Identities = 53/89 (59%), Positives = 67/89 (75%)
Frame = -1
Query: 290 IRLCANLKEVDFARQLHSRVMKSGFESDPNIRTTLTVNYTKCSEMNDTFKLFCTNHRVHN 111
I+ CAN+KE+ FARQLH +V+K GFE D NIRT L V Y K E++D FK+F + + N
Sbjct: 306 IKSCANIKELGFARQLHGQVLKGGFEYDHNIRTALMVAYNKGREIDDAFKIFSMMYGIRN 365
Query: 110 VVTWTAIISGYLKNSDIEQAVKLFCQMSR 24
VV+WTAIISG+L+N EQAV LFC+MSR
Sbjct: 366 VVSWTAIISGHLQNGLAEQAVNLFCEMSR 394
Score = 56.2 bits (134), Expect = 3e-06
Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Frame = -1
Query: 248 QLHSRVMKSGFESDPNIRTTLTVNYTKCSEMNDTFKLFCTNHRV--HNVVTWTAIISGYL 75
++H++V+KS +E P++ T L Y K +N+ K+F R+ ++V W+A+++GY
Sbjct: 418 EVHAQVIKSDYEKSPSVGTALLDAYVKLGNLNEASKVF---ERIDDKDIVAWSAMVAGYA 474
Query: 74 KNSDIEQAVKLFCQMSR 24
+ D E AVK+ QM++
Sbjct: 475 QTGDTEGAVKILIQMAK 491
>ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 878
Score = 102 bits (253), Expect = 4e-20
Identities = 45/89 (50%), Positives = 67/89 (75%)
Frame = -1
Query: 290 IRLCANLKEVDFARQLHSRVMKSGFESDPNIRTTLTVNYTKCSEMNDTFKLFCTNHRVHN 111
++LC+ +E++F +QLH V+K+G+E +IRT L V Y+KCS +++ FKLF HN
Sbjct: 313 LKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHN 372
Query: 110 VVTWTAIISGYLKNSDIEQAVKLFCQMSR 24
VVTWTA+I G+++N++ E+AV LFCQMSR
Sbjct: 373 VVTWTAMIGGFVQNNNNEKAVDLFCQMSR 401
Score = 55.5 bits (132), Expect = 5e-06
Identities = 29/93 (31%), Positives = 51/93 (54%)
Frame = -1
Query: 308 LNIEWNIRLCANLKEVDFARQLHSRVMKSGFESDPNIRTTLTVNYTKCSEMNDTFKLFCT 129
L + +++C L + RQ+H + +KSGF D ++ T+L Y K + D +F
Sbjct: 105 LTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIF-D 163
Query: 128 NHRVHNVVTWTAIISGYLKNSDIEQAVKLFCQM 30
+ NVV+WT+++SGY +N ++ + L QM
Sbjct: 164 EMGIKNVVSWTSLLSGYARNGLNDEVIHLINQM 196
>ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g27610-like [Cucumis sativus]
Length = 878
Score = 100 bits (249), Expect = 1e-19
Identities = 44/89 (49%), Positives = 67/89 (75%)
Frame = -1
Query: 290 IRLCANLKEVDFARQLHSRVMKSGFESDPNIRTTLTVNYTKCSEMNDTFKLFCTNHRVHN 111
++LC+ +E++F +QLH V+K+G+E +IRT L V Y+KCS +++ FKLF HN
Sbjct: 313 LKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHN 372
Query: 110 VVTWTAIISGYLKNSDIEQAVKLFCQMSR 24
VVTWTA+I G+++N++ ++AV LFCQMSR
Sbjct: 373 VVTWTAMIGGFVQNNNNKKAVDLFCQMSR 401
Score = 55.5 bits (132), Expect = 5e-06
Identities = 29/93 (31%), Positives = 51/93 (54%)
Frame = -1
Query: 308 LNIEWNIRLCANLKEVDFARQLHSRVMKSGFESDPNIRTTLTVNYTKCSEMNDTFKLFCT 129
L + +++C L + RQ+H + +KSGF D ++ T+L Y K + D +F
Sbjct: 105 LTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIF-D 163
Query: 128 NHRVHNVVTWTAIISGYLKNSDIEQAVKLFCQM 30
+ NVV+WT+++SGY +N ++ + L QM
Sbjct: 164 EMGIKNVVSWTSLLSGYARNGLNDEVIHLINQM 196