BLASTX nr result

ID: Panax21_contig00016904 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00016904
         (361 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003609575.1| Helicase swr1 [Medicago truncatula] gi|35551...    62   6e-08
ref|XP_003609574.1| Helicase swr1 [Medicago truncatula] gi|35551...    62   6e-08
ref|XP_002311806.1| hypothetical protein POPTRDRAFT_766749 [Popu...    59   3e-07
ref|XP_002311805.1| chromatin remodeling complex subunit [Populu...    59   3e-07

>ref|XP_003609575.1| Helicase swr1 [Medicago truncatula] gi|355510630|gb|AES91772.1|
           Helicase swr1 [Medicago truncatula]
          Length = 3310

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 32/81 (39%), Positives = 49/81 (60%)
 Frame = -3

Query: 344 QGGEHGQFNNMIQSNSQTDHSALLTSAMKSVLRAKQETQHQAEKSLDSANVSTSLSRASH 165
           + GE   F+ ++ +NSQ ++ +  +  MK++LRA  E  H   K  DS N+     RA +
Sbjct: 246 KSGEMTNFS-VVPNNSQMENISTFSGNMKTMLRANPEGHHLLAKQTDSTNIGNPTGRAPN 304

Query: 164 SRHPEEIEVSSAHNALGLHQG 102
           S++PE++EVSSAH A G  QG
Sbjct: 305 SKYPEDLEVSSAHIAPGKQQG 325


>ref|XP_003609574.1| Helicase swr1 [Medicago truncatula] gi|355510629|gb|AES91771.1|
           Helicase swr1 [Medicago truncatula]
          Length = 3312

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 32/81 (39%), Positives = 49/81 (60%)
 Frame = -3

Query: 344 QGGEHGQFNNMIQSNSQTDHSALLTSAMKSVLRAKQETQHQAEKSLDSANVSTSLSRASH 165
           + GE   F+ ++ +NSQ ++ +  +  MK++LRA  E  H   K  DS N+     RA +
Sbjct: 246 KSGEMTNFS-VVPNNSQMENISTFSGNMKTMLRANPEGHHLLAKQTDSTNIGNPTGRAPN 304

Query: 164 SRHPEEIEVSSAHNALGLHQG 102
           S++PE++EVSSAH A G  QG
Sbjct: 305 SKYPEDLEVSSAHIAPGKQQG 325


>ref|XP_002311806.1| hypothetical protein POPTRDRAFT_766749 [Populus trichocarpa]
           gi|222851626|gb|EEE89173.1| hypothetical protein
           POPTRDRAFT_766749 [Populus trichocarpa]
          Length = 539

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 30/63 (47%), Positives = 42/63 (66%)
 Frame = -3

Query: 191 STSLSRASHSRHPEEIEVSSAHNALGLHQGGSLSSTHDVLNSRGLLNQTKIGLPFEKSQV 12
           +TS ++  +S    ++EVSS+  + G  QGGSL S H+ L SRG+ NQ K GLP E+S +
Sbjct: 39  NTSFNKVPNSG---QLEVSSSFVSAGQQQGGSLPSAHESLTSRGMWNQNKAGLPLERSHI 95

Query: 11  PRF 3
           PRF
Sbjct: 96  PRF 98


>ref|XP_002311805.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222851625|gb|EEE89172.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 3427

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 30/63 (47%), Positives = 42/63 (66%)
 Frame = -3

Query: 191 STSLSRASHSRHPEEIEVSSAHNALGLHQGGSLSSTHDVLNSRGLLNQTKIGLPFEKSQV 12
           +TS ++  +S    ++EVSS+  + G  QGGSL S H+ L SRG+ NQ K GLP E+S +
Sbjct: 176 NTSFNKVPNSG---QLEVSSSFVSAGQQQGGSLPSAHESLTSRGMWNQNKAGLPLERSHI 232

Query: 11  PRF 3
           PRF
Sbjct: 233 PRF 235


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