BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00016876
         (446 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36966.3| unnamed protein product [Vitis vinifera]               86   4e-15
ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containi...    86   4e-15
ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thalia...    68   7e-10
ref|XP_002881173.1| pentatricopeptide repeat-containing protein ...    67   2e-09
ref|XP_002515260.1| pentatricopeptide repeat-containing protein,...    65   8e-09

>emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 50/83 (60%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
 Frame = +2

Query: 203 FTAPKVSLSHH--KPRNAANPPSRIPKTTLPGNPSFHSFSPSLPRSKSEFSASDFSGRRS 376
           +++ KVSL++    PRNAA P +  P T    N +F S SP LP SKSE +A DFSGRRS
Sbjct: 36  WSSHKVSLTNPLPSPRNAAKPGAASPATATNRNSNFPSLSP-LPPSKSELTA-DFSGRRS 93

Query: 377 TRYVSKMHFGRQKTTAASRHTST 445
           TR+VSKMHFGR KT AA+RHTST
Sbjct: 94  TRFVSKMHFGRPKTAAAARHTST 116


>ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 50/83 (60%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
 Frame = +2

Query: 203 FTAPKVSLSHH--KPRNAANPPSRIPKTTLPGNPSFHSFSPSLPRSKSEFSASDFSGRRS 376
           +++ KVSL++    PRNAA P +  P T    N +F S SP LP SKSE +A DFSGRRS
Sbjct: 36  WSSHKVSLTNPLPSPRNAAKPGAASPATATNRNSNFPSLSP-LPPSKSELTA-DFSGRRS 93

Query: 377 TRYVSKMHFGRQKTTAASRHTST 445
           TR+VSKMHFGR KT AA+RHTST
Sbjct: 94  TRFVSKMHFGRPKTAAAARHTST 116


>ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
           gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
           gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis
           thaliana] gi|330253448|gb|AEC08542.1| genomes uncoupled
           1 protein [Arabidopsis thaliana]
          Length = 918

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 39/68 (57%), Positives = 46/68 (67%)
 Frame = +2

Query: 239 PRNAANPPSRIPKTTLPGNPSFHSFSPSLPRSKSEFSASDFSGRRSTRYVSKMHFGRQKT 418
           PR +A PPS +            +FSP L   KS+ S SDFSGRRSTR+VSKMHFGRQKT
Sbjct: 98  PRGSAPPPSSVATVAPAQLSQPPNFSP-LQTPKSDLS-SDFSGRRSTRFVSKMHFGRQKT 155

Query: 419 TAASRHTS 442
           T A+RH+S
Sbjct: 156 TMATRHSS 163


>ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297327012|gb|EFH57432.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 917

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 38/68 (55%), Positives = 45/68 (66%)
 Frame = +2

Query: 239 PRNAANPPSRIPKTTLPGNPSFHSFSPSLPRSKSEFSASDFSGRRSTRYVSKMHFGRQKT 418
           PR +A PPS +            +FSP L   KS+ S SDFSGRRSTR+VSKMHFGR KT
Sbjct: 98  PRGSAPPPSSVATVAPAQLSQTPNFSP-LQTPKSDLS-SDFSGRRSTRFVSKMHFGRPKT 155

Query: 419 TAASRHTS 442
           T A+RH+S
Sbjct: 156 TMATRHSS 163


>ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545740|gb|EEF47244.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 878

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 47/123 (38%), Positives = 59/123 (47%)
 Frame = +2

Query: 74  STPPPHYTLTTANKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTAPKVSLSHHKPRNAA 253
           ++ PPH ++T A KP                             T P ++ S      AA
Sbjct: 2   ASTPPHCSIT-ATKPYQNHQYPQNHLKNHRQTHHHRWTNQKVSLTKPPLAPSPCNAPKAA 60

Query: 254 NPPSRIPKTTLPGNPSFHSFSPSLPRSKSEFSASDFSGRRSTRYVSKMHFGRQKTTAASR 433
              +    T    NP+FHS SP L   KS+ SA DFSGRRSTR+VSK+HFGR KT   +R
Sbjct: 61  AAAAAATTTHHTPNPTFHSLSP-LQSQKSDLSA-DFSGRRSTRFVSKLHFGRPKTN-MNR 117

Query: 434 HTS 442
           HTS
Sbjct: 118 HTS 120