BLASTX nr result

ID: Panax21_contig00016545 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00016545
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301653.1| predicted protein [Populus trichocarpa] gi|2...    67   2e-09
ref|XP_002284709.1| PREDICTED: eukaryotic translation initiation...    65   6e-09
ref|XP_002305897.1| predicted protein [Populus trichocarpa] gi|2...    63   2e-08
gb|ABK92969.1| unknown [Populus trichocarpa]                           63   2e-08
ref|XP_002519577.1| Eukaryotic translation initiation factor 3 s...    58   9e-07

>ref|XP_002301653.1| predicted protein [Populus trichocarpa] gi|222843379|gb|EEE80926.1|
           predicted protein [Populus trichocarpa]
          Length = 116

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 37/90 (41%), Positives = 44/90 (48%)
 Frame = -2

Query: 271 MEDWEDEPAPLVLKKELPKNLWXXXXXXXXXXXDSWXXXXXXXXXXXXXXXXXXXXXXXX 92
           MEDWED   P +L KE PKN W           +SW                        
Sbjct: 27  MEDWEDVQVPPLLSKEQPKNKWDDEDVDEDDVKESWEDEDEPAPAPVVKPPPEKAPKKSA 86

Query: 91  XKGSEKRGKAVEVVKEEPLDPVAEKLRQQR 2
            K +EK+GK V+V+KEE LDP+AEKLRQQR
Sbjct: 87  AKSTEKKGKTVQVLKEEKLDPLAEKLRQQR 116


>ref|XP_002284709.1| PREDICTED: eukaryotic translation initiation factor 3 subunit J
           [Vitis vinifera] gi|296088327|emb|CBI36772.3| unnamed
           protein product [Vitis vinifera]
          Length = 222

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 38/90 (42%), Positives = 43/90 (47%)
 Frame = -2

Query: 271 MEDWEDEPAPLVLKKELPKNLWXXXXXXXXXXXDSWXXXXXXXXXXXXXXXXXXXXXXXX 92
           MEDWEDEP   + KKE PKN W           +SW                        
Sbjct: 1   MEDWEDEPITPLGKKEEPKNKWDDEDLDDDNVKESWEDEDEPAPAPVIQPPAEKPPKKPV 60

Query: 91  XKGSEKRGKAVEVVKEEPLDPVAEKLRQQR 2
            K +EK+GKAVE V E  LDPVAEK+RQQR
Sbjct: 61  EKATEKKGKAVEAVTEVTLDPVAEKIRQQR 90


>ref|XP_002305897.1| predicted protein [Populus trichocarpa] gi|222848861|gb|EEE86408.1|
           predicted protein [Populus trichocarpa]
          Length = 222

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 33/90 (36%), Positives = 44/90 (48%)
 Frame = -2

Query: 271 MEDWEDEPAPLVLKKELPKNLWXXXXXXXXXXXDSWXXXXXXXXXXXXXXXXXXXXXXXX 92
           MEDWEDE  P ++ K+ PK+ W           +SW                        
Sbjct: 1   MEDWEDEQVPPLVAKDQPKSKWDDEDVDEDDVKESWEDEDEPDPAPVVKPPPEMAPKKPA 60

Query: 91  XKGSEKRGKAVEVVKEEPLDPVAEKLRQQR 2
            K +EK+G   +VVK++PLDP+AEKLRQQR
Sbjct: 61  VKSTEKKGNTTDVVKDQPLDPLAEKLRQQR 90


>gb|ABK92969.1| unknown [Populus trichocarpa]
          Length = 222

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 33/90 (36%), Positives = 44/90 (48%)
 Frame = -2

Query: 271 MEDWEDEPAPLVLKKELPKNLWXXXXXXXXXXXDSWXXXXXXXXXXXXXXXXXXXXXXXX 92
           MEDWEDE  P ++ K+ PK+ W           +SW                        
Sbjct: 1   MEDWEDEQVPPLVAKDQPKSKWDDEDVDEDDVKESWEDEDEPDPAPVVKPPPEMAPKKPA 60

Query: 91  XKGSEKRGKAVEVVKEEPLDPVAEKLRQQR 2
            K +EK+G   +VVK++PLDP+AEKLRQQR
Sbjct: 61  VKSTEKKGNTTDVVKDQPLDPLAEKLRQQR 90


>ref|XP_002519577.1| Eukaryotic translation initiation factor 3 subunit, putative
           [Ricinus communis] gi|223541235|gb|EEF42788.1|
           Eukaryotic translation initiation factor 3 subunit,
           putative [Ricinus communis]
          Length = 222

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 38/92 (41%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
 Frame = -2

Query: 271 MEDWEDEPAPLVLKKELPKNLWXXXXXXXXXXXDSWXXXXXXXXXXXXXXXXXXXXXXXX 92
           MEDWEDE  P ++ KE PK+ W           +SW                        
Sbjct: 1   MEDWEDEQIPPLILKEQPKSKWDDEDVDDNDVKESWEDEDEPAPEPVAKPPPEKATKKPV 60

Query: 91  XKGSEKRGKAVEVVKEE--PLDPVAEKLRQQR 2
            K  EK+GK V V KEE  PLDPVAEKLRQQR
Sbjct: 61  TKSIEKKGKTV-VAKEESQPLDPVAEKLRQQR 91


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