BLASTX nr result

ID: Panax21_contig00016486 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00016486
         (359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324606.1| predicted protein [Populus trichocarpa] gi|2...   128   4e-28
ref|XP_002276495.1| PREDICTED: uncharacterized protein LOC100265...   120   1e-25
ref|XP_002532144.1| conserved hypothetical protein [Ricinus comm...   102   3e-20
ref|NP_193739.1| integrator complex subunit 7 [Arabidopsis thali...    88   6e-16
ref|XP_002867893.1| EMB1895 [Arabidopsis lyrata subsp. lyrata] g...    86   4e-15

>ref|XP_002324606.1| predicted protein [Populus trichocarpa] gi|222866040|gb|EEF03171.1|
            predicted protein [Populus trichocarpa]
          Length = 1237

 Score =  128 bits (322), Expect = 4e-28
 Identities = 63/112 (56%), Positives = 81/112 (72%)
 Frame = +2

Query: 23   QSRNHILNIGTETRSIITVCSFAVAGAVALQNDANRVHHDFIQSRLTSDGLQLLLNIITK 202
            QSR+  LNI  E R I+ VC++ VAG VAL+ +ANR  ++ I S++T DG QLLLN ITK
Sbjct: 902  QSRSQRLNISGEERDILDVCNYIVAGIVALKEEANRKKNEEILSQVTKDGFQLLLNTITK 961

Query: 203  WMQIPFWTPTYFFRIRPPLSSQFFTLDRDARHGGGLSVFRGFHLSLNLCLQL 358
            WM+IPF  PTYFF+IRP + S+ F  + D R+   LSV  GF+LSLNLC+QL
Sbjct: 962  WMRIPFQVPTYFFKIRPCIGSELFVFNADTRNSNQLSVLPGFNLSLNLCIQL 1013


>ref|XP_002276495.1| PREDICTED: uncharacterized protein LOC100265170 [Vitis vinifera]
            gi|296082233|emb|CBI21238.3| unnamed protein product
            [Vitis vinifera]
          Length = 1166

 Score =  120 bits (300), Expect = 1e-25
 Identities = 59/119 (49%), Positives = 79/119 (66%)
 Frame = +2

Query: 2    PRSYFPPQSRNHILNIGTETRSIITVCSFAVAGAVALQNDANRVHHDFIQSRLTSDGLQL 181
            P+S    QS N I + G   + ++TVC +AV   V LQN+AN+ H++   S+LT+DG Q 
Sbjct: 896  PKSCCHLQSGNQIWSSGCGVKDVLTVCRYAVTRVVHLQNEANKGHNEEDLSQLTNDGWQC 955

Query: 182  LLNIITKWMQIPFWTPTYFFRIRPPLSSQFFTLDRDARHGGGLSVFRGFHLSLNLCLQL 358
            LL+++TKWM IPF TP YFF+IR  + S+ F    D R   G+S+  GFHLSLNLCLQL
Sbjct: 956  LLDVVTKWMHIPFQTPKYFFQIRQCVGSELFASSTDTRSPDGISILPGFHLSLNLCLQL 1014


>ref|XP_002532144.1| conserved hypothetical protein [Ricinus communis]
            gi|223528180|gb|EEF30243.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 1166

 Score =  102 bits (254), Expect = 3e-20
 Identities = 51/115 (44%), Positives = 71/115 (61%)
 Frame = +2

Query: 14   FPPQSRNHILNIGTETRSIITVCSFAVAGAVALQNDANRVHHDFIQSRLTSDGLQLLLNI 193
            F  + RN I++ G   R I ++C +AV+G + LQN+  RV ++ I S     G QL+L  
Sbjct: 901  FHLRPRNQIVHSGGNIREIRSLCEYAVSGILGLQNETKRVPNEEILSHTARCGSQLVLKT 960

Query: 194  ITKWMQIPFWTPTYFFRIRPPLSSQFFTLDRDARHGGGLSVFRGFHLSLNLCLQL 358
            I KW+ IPF  P YFF++RP + S+ F    D R+   L++  GFHLSLNLCLQL
Sbjct: 961  IMKWINIPFRIPKYFFKLRPCIGSELFAFSADTRNPTELTLLPGFHLSLNLCLQL 1015


>ref|NP_193739.1| integrator complex subunit 7 [Arabidopsis thaliana]
            gi|2827660|emb|CAA16614.1| hypothetical protein
            [Arabidopsis thaliana] gi|7268801|emb|CAB79006.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332658868|gb|AEE84268.1| integrator complex subunit 7
            [Arabidopsis thaliana]
          Length = 1134

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
 Frame = +2

Query: 14   FPPQSRNHILNIGTETRSIITVCSFAVAGAVALQNDANRVHHDFIQSRLTSDGLQLLLNI 193
            F  QSRN +L +  + + ++++C  A++    LQN +  +H + I S +T     LL   
Sbjct: 875  FHLQSRNQVLRVCGKVKMLLSICRDALSCTYGLQNQSMSMHKEEIMSEITKSCRHLLSQA 934

Query: 194  ITKWMQIPFWTPTYFFRIRPPLSSQFFTLDRDA--RHGGGLSVFRGFHLSLNLCLQL 358
            I KWMQIPF  P YFF IRP + ++ F L  ++  R    +SV +GF LSL+LCLQL
Sbjct: 935  IMKWMQIPFGIPKYFFNIRPCVGAELFALSSESSKRIPDTVSVEQGFQLSLDLCLQL 991


>ref|XP_002867893.1| EMB1895 [Arabidopsis lyrata subsp. lyrata]
            gi|297313729|gb|EFH44152.1| EMB1895 [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1134

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
 Frame = +2

Query: 23   QSRNHILNIGTETRSIITVCSFAVAGAVALQNDANRVHHDFIQSRLTSDGLQLLLNIITK 202
            Q RN +L +  + + ++++C  A++    LQN +  +H + I S +T     LL   I K
Sbjct: 878  QPRNQVLRVCGKVKILLSICRDALSCIYGLQNQSMSMHKEEIMSEITKSCRNLLSQAIMK 937

Query: 203  WMQIPFWTPTYFFRIRPPLSSQFFTLDRDA--RHGGGLSVFRGFHLSLNLCLQL 358
            WMQIPF  P YFF IRP + ++ F L  ++  R    +SV +GF LSL+LCLQL
Sbjct: 938  WMQIPFGIPKYFFNIRPCVGAELFALSSESSKRTPDTVSVEQGFQLSLDLCLQL 991


Top