BLASTX nr result
ID: Panax21_contig00016459
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00016459
(932 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002314629.1| SIN3 component, histone deacetylase complex ... 199 1e-48
ref|XP_002311786.1| SIN3 component, histone deacetylase complex ... 197 4e-48
ref|XP_002267856.2| PREDICTED: paired amphipathic helix protein ... 192 9e-47
emb|CBI32068.3| unnamed protein product [Vitis vinifera] 192 9e-47
ref|XP_004155336.1| PREDICTED: LOW QUALITY PROTEIN: paired amphi... 190 4e-46
>ref|XP_002314629.1| SIN3 component, histone deacetylase complex [Populus trichocarpa]
gi|222863669|gb|EEF00800.1| SIN3 component, histone
deacetylase complex [Populus trichocarpa]
Length = 1385
Score = 199 bits (505), Expect = 1e-48
Identities = 104/149 (69%), Positives = 116/149 (77%), Gaps = 4/149 (2%)
Frame = +3
Query: 324 RVLLHDENIYRIECSSAPLRLSIQLMDYGYEKPEVTAVSMDPIFAFYMNNDFLSLVPDKK 503
RVLLHDENIYRIECSSAP LSIQLMD+G++KPEVTAVSMDP FA Y+ NDFL +VPDKK
Sbjct: 1237 RVLLHDENIYRIECSSAPTHLSIQLMDFGHDKPEVTAVSMDPNFASYLLNDFLPVVPDKK 1296
Query: 504 EKPGVVLKRNMRIFAKEDEFSNTCQSMEGLKIFNGLECKIACNSYKVSYVLDTEDFLIRT 683
EKPG+ LKRN R A DE CQ+MEG ++FNGLECKIACNS KVSYVLDTEDFL RT
Sbjct: 1297 EKPGIFLKRNKRRNANSDE----CQAMEGFRVFNGLECKIACNSSKVSYVLDTEDFLFRT 1352
Query: 684 KRRTSHDQANPS----NGCSARVQRFHRF 758
R++ Q N S S RVQRFHR+
Sbjct: 1353 GRKSRTLQQNGSCHNQEKISKRVQRFHRW 1381
Score = 112 bits (281), Expect = 1e-22
Identities = 53/65 (81%), Positives = 61/65 (93%)
Frame = +1
Query: 4 AKFMNAVYSLLDGSSDNTKFEDDCRTMMGAQSYVLFTLDKLIYKLVKQLQTVTTDELDSK 183
A+FM+A+Y+LLDGSSDNTKFEDDCR ++G QSYVLFTLDKLIYKLVKQLQTV DE+D+K
Sbjct: 1152 ARFMSALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVAADEMDNK 1211
Query: 184 LLQLY 198
LLQLY
Sbjct: 1212 LLQLY 1216
>ref|XP_002311786.1| SIN3 component, histone deacetylase complex [Populus trichocarpa]
gi|222851606|gb|EEE89153.1| SIN3 component, histone
deacetylase complex [Populus trichocarpa]
Length = 1343
Score = 197 bits (500), Expect = 4e-48
Identities = 101/149 (67%), Positives = 117/149 (78%), Gaps = 5/149 (3%)
Frame = +3
Query: 324 RVLLHDENIYRIECSSAPLRLSIQLMDYGYEKPEVTAVSMDPIFAFYMNNDFLSLVPDKK 503
RVLLHDENIYRIECSSAP RLSIQLMD+G++KPEVTAVSMDP FA Y++NDFLS+VPDKK
Sbjct: 1193 RVLLHDENIYRIECSSAPTRLSIQLMDFGHDKPEVTAVSMDPNFASYLHNDFLSVVPDKK 1252
Query: 504 EKPGVVLKRNMRIFAKEDEFSNTCQSMEGLKIFNGLECKIACNSYKVSYVLDTEDFLIRT 683
EKPG+ LKRN ++ DE CQ+MEG ++ NGLECKIACNS KVSYVLDTEDFL R
Sbjct: 1253 EKPGIFLKRNKHRYSDADE----CQAMEGFRVLNGLECKIACNSSKVSYVLDTEDFLFRP 1308
Query: 684 KRRTSHDQANPS-----NGCSARVQRFHR 755
++++ Q N S S RVQRFHR
Sbjct: 1309 QKKSKTLQQNGSCHDDQAKISKRVQRFHR 1337
Score = 103 bits (256), Expect = 8e-20
Identities = 54/84 (64%), Positives = 62/84 (73%), Gaps = 19/84 (22%)
Frame = +1
Query: 4 AKFMNAVYSLLDGSSDNTKFEDDCRTMMGAQSYVLFTLDKLIYKLVK------------- 144
A+FM+A+Y+LLDGSSDNTKFEDDCR ++G QSYVLFTLDKLIYKLVK
Sbjct: 1089 ARFMSALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQSSAFLDLISSHQ 1148
Query: 145 ------QLQTVTTDELDSKLLQLY 198
QLQTV TDE+D+KLLQLY
Sbjct: 1149 VLFYFPQLQTVATDEMDNKLLQLY 1172
>ref|XP_002267856.2| PREDICTED: paired amphipathic helix protein Sin3-like 4-like [Vitis
vinifera]
Length = 1421
Score = 192 bits (488), Expect = 9e-47
Identities = 100/144 (69%), Positives = 117/144 (81%), Gaps = 8/144 (5%)
Frame = +3
Query: 324 RVLLHDENIYRIECSSAPLRLSIQLMDYGYEKPEVTAVSMDPIFAFYMNNDFLSLVPDKK 503
RVLLHDENIYRIECSSAP L+IQLMD G++KPEVTAVSMDP FA Y+N+DFLS+V +KK
Sbjct: 1261 RVLLHDENIYRIECSSAPTHLTIQLMDNGHDKPEVTAVSMDPNFAAYLNSDFLSVVNEKK 1320
Query: 504 EKPGVVLKRNMRIFAKEDEFSNTCQSMEGLKIFNGLECKIACNSYKVSYVLDTEDFL--I 677
K G+ L+RN R +A+ DEFS CQ+MEGL++ NGLECKIAC+S KVSYVLDTEDFL +
Sbjct: 1321 -KSGIFLRRNKRKYARGDEFSVACQAMEGLQVVNGLECKIACSSSKVSYVLDTEDFLFRV 1379
Query: 678 RTKRRTS------HDQANPSNGCS 731
R KR+TS HDQA SNGCS
Sbjct: 1380 RKKRKTSVRKSSCHDQAKSSNGCS 1403
Score = 116 bits (291), Expect = 7e-24
Identities = 55/65 (84%), Positives = 62/65 (95%)
Frame = +1
Query: 4 AKFMNAVYSLLDGSSDNTKFEDDCRTMMGAQSYVLFTLDKLIYKLVKQLQTVTTDELDSK 183
A+FMNA+Y+LLDGSSDNTKFEDDCR ++G QSYVLFTLDKLIYKLVKQLQTV TDE+D+K
Sbjct: 1176 ARFMNALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVATDEMDNK 1235
Query: 184 LLQLY 198
LLQLY
Sbjct: 1236 LLQLY 1240
>emb|CBI32068.3| unnamed protein product [Vitis vinifera]
Length = 1445
Score = 192 bits (488), Expect = 9e-47
Identities = 100/144 (69%), Positives = 117/144 (81%), Gaps = 8/144 (5%)
Frame = +3
Query: 324 RVLLHDENIYRIECSSAPLRLSIQLMDYGYEKPEVTAVSMDPIFAFYMNNDFLSLVPDKK 503
RVLLHDENIYRIECSSAP L+IQLMD G++KPEVTAVSMDP FA Y+N+DFLS+V +KK
Sbjct: 1285 RVLLHDENIYRIECSSAPTHLTIQLMDNGHDKPEVTAVSMDPNFAAYLNSDFLSVVNEKK 1344
Query: 504 EKPGVVLKRNMRIFAKEDEFSNTCQSMEGLKIFNGLECKIACNSYKVSYVLDTEDFL--I 677
K G+ L+RN R +A+ DEFS CQ+MEGL++ NGLECKIAC+S KVSYVLDTEDFL +
Sbjct: 1345 -KSGIFLRRNKRKYARGDEFSVACQAMEGLQVVNGLECKIACSSSKVSYVLDTEDFLFRV 1403
Query: 678 RTKRRTS------HDQANPSNGCS 731
R KR+TS HDQA SNGCS
Sbjct: 1404 RKKRKTSVRKSSCHDQAKSSNGCS 1427
Score = 116 bits (291), Expect = 7e-24
Identities = 55/65 (84%), Positives = 62/65 (95%)
Frame = +1
Query: 4 AKFMNAVYSLLDGSSDNTKFEDDCRTMMGAQSYVLFTLDKLIYKLVKQLQTVTTDELDSK 183
A+FMNA+Y+LLDGSSDNTKFEDDCR ++G QSYVLFTLDKLIYKLVKQLQTV TDE+D+K
Sbjct: 1200 ARFMNALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVATDEMDNK 1259
Query: 184 LLQLY 198
LLQLY
Sbjct: 1260 LLQLY 1264
>ref|XP_004155336.1| PREDICTED: LOW QUALITY PROTEIN: paired amphipathic helix protein
Sin3-like 4-like [Cucumis sativus]
Length = 1419
Score = 190 bits (483), Expect = 4e-46
Identities = 100/153 (65%), Positives = 119/153 (77%), Gaps = 9/153 (5%)
Frame = +3
Query: 324 RVLLHDENIYRIECSSAPLRLSIQLMDYGYEKPEVTAVSMDPIFAFYMNNDFLSLVPDKK 503
RVLLHD+NIYRIE SS P LSIQLMDYGY+KPEVTAVSMDPIF+ Y++NDF S++P+KK
Sbjct: 1262 RVLLHDDNIYRIERSSTPTHLSIQLMDYGYDKPEVTAVSMDPIFSSYLHNDFFSVLPEKK 1321
Query: 504 EKPGVVLKRNMRIFAKEDEFSNTCQSMEGLKIFNGLECKIACNSYKVSYVLDTEDFLIR- 680
K G+ LKRN R +A DE S C +MEGLKI NGLECKIACNS KVSYVLDTEDFL R
Sbjct: 1322 VKSGIFLKRNKRKYACGDENSAACHAMEGLKIVNGLECKIACNSSKVSYVLDTEDFLFRR 1381
Query: 681 -TKRR------TSHDQANPSNG-CSARVQRFHR 755
+KR+ + H+Q+ S+G S RVQ+FH+
Sbjct: 1382 NSKRKRLHGNNSCHNQSRSSSGDSSRRVQKFHK 1414
Score = 114 bits (286), Expect = 3e-23
Identities = 54/65 (83%), Positives = 61/65 (93%)
Frame = +1
Query: 4 AKFMNAVYSLLDGSSDNTKFEDDCRTMMGAQSYVLFTLDKLIYKLVKQLQTVTTDELDSK 183
A+FMNA+YSLLDGSSDNTKFEDDCR +G QSYVLFTLDKLIYK+VKQLQTV +DE+D+K
Sbjct: 1177 ARFMNALYSLLDGSSDNTKFEDDCRATIGTQSYVLFTLDKLIYKIVKQLQTVASDEMDNK 1236
Query: 184 LLQLY 198
LLQLY
Sbjct: 1237 LLQLY 1241