BLASTX nr result

ID: Panax21_contig00016420 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00016420
         (754 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002527496.1| histone deacetylase hda2, putative [Ricinus ...   232   6e-59
emb|CBI22472.3| unnamed protein product [Vitis vinifera]              222   7e-56
ref|XP_002263779.1| PREDICTED: histone deacetylase 6-like [Vitis...   222   7e-56
ref|XP_002313903.1| predicted protein [Populus trichocarpa] gi|1...   217   2e-54
ref|XP_004152271.1| PREDICTED: histone deacetylase 6-like [Cucum...   206   4e-51

>ref|XP_002527496.1| histone deacetylase hda2, putative [Ricinus communis]
           gi|223533136|gb|EEF34894.1| histone deacetylase hda2,
           putative [Ricinus communis]
          Length = 159

 Score =  232 bits (592), Expect = 6e-59
 Identities = 104/128 (81%), Positives = 113/128 (88%)
 Frame = -3

Query: 668 EDEELVQLYGSESGWVEARTHCDHLDSLSSDLTHIPTPDTACHRCDHPDENWLCLCCKDV 489
           ED+EL+ +YGSESGWVEA+T CDHL SLSSDL+HI TPDT CHRC HP ENWLCL CKDV
Sbjct: 21  EDDELMTVYGSESGWVEAKTSCDHLGSLSSDLSHISTPDTPCHRCQHPSENWLCLSCKDV 80

Query: 488 LCSRFVNKHMLEHSQQREHSLALSYSDLSVWCFSCDAYLDAQVILPLRPVYETAYILKFG 309
           LCSRFVNKHML+H  Q  H +ALSYSDLSVWCF+CDAYLDAQVI+ LRPVYETAYILKFG
Sbjct: 81  LCSRFVNKHMLQHYHQTHHCVALSYSDLSVWCFACDAYLDAQVIMQLRPVYETAYILKFG 140

Query: 308 EAPPFRTV 285
           EAPPFR V
Sbjct: 141 EAPPFRAV 148


>emb|CBI22472.3| unnamed protein product [Vitis vinifera]
          Length = 153

 Score =  222 bits (565), Expect = 7e-56
 Identities = 102/127 (80%), Positives = 110/127 (86%)
 Frame = -3

Query: 668 EDEELVQLYGSESGWVEARTHCDHLDSLSSDLTHIPTPDTACHRCDHPDENWLCLCCKDV 489
           EDEE   LYG+ESGWVEART CDHL SLSSDL HIPTP+T C+RC +P ENWLCLCCK+V
Sbjct: 17  EDEEF--LYGAESGWVEARTSCDHLASLSSDLVHIPTPETPCNRCHNPSENWLCLCCKEV 74

Query: 488 LCSRFVNKHMLEHSQQREHSLALSYSDLSVWCFSCDAYLDAQVILPLRPVYETAYILKFG 309
           LCSRFVNKHMLEH Q+  H LALSYSDLS+WCFSCDAYLDAQ IL L PVYETAYILKFG
Sbjct: 75  LCSRFVNKHMLEHYQKVNHCLALSYSDLSIWCFSCDAYLDAQAILQLHPVYETAYILKFG 134

Query: 308 EAPPFRT 288
           +APPF T
Sbjct: 135 QAPPFPT 141


>ref|XP_002263779.1| PREDICTED: histone deacetylase 6-like [Vitis vinifera]
          Length = 154

 Score =  222 bits (565), Expect = 7e-56
 Identities = 102/127 (80%), Positives = 110/127 (86%)
 Frame = -3

Query: 668 EDEELVQLYGSESGWVEARTHCDHLDSLSSDLTHIPTPDTACHRCDHPDENWLCLCCKDV 489
           EDEE   LYG+ESGWVEART CDHL SLSSDL HIPTP+T C+RC +P ENWLCLCCK+V
Sbjct: 18  EDEEF--LYGAESGWVEARTSCDHLASLSSDLVHIPTPETPCNRCHNPSENWLCLCCKEV 75

Query: 488 LCSRFVNKHMLEHSQQREHSLALSYSDLSVWCFSCDAYLDAQVILPLRPVYETAYILKFG 309
           LCSRFVNKHMLEH Q+  H LALSYSDLS+WCFSCDAYLDAQ IL L PVYETAYILKFG
Sbjct: 76  LCSRFVNKHMLEHYQKVNHCLALSYSDLSIWCFSCDAYLDAQAILQLHPVYETAYILKFG 135

Query: 308 EAPPFRT 288
           +APPF T
Sbjct: 136 QAPPFPT 142


>ref|XP_002313903.1| predicted protein [Populus trichocarpa] gi|118483848|gb|ABK93815.1|
           unknown [Populus trichocarpa]
           gi|222850311|gb|EEE87858.1| predicted protein [Populus
           trichocarpa]
          Length = 160

 Score =  217 bits (552), Expect = 2e-54
 Identities = 98/128 (76%), Positives = 111/128 (86%)
 Frame = -3

Query: 668 EDEELVQLYGSESGWVEARTHCDHLDSLSSDLTHIPTPDTACHRCDHPDENWLCLCCKDV 489
           ED+E   +YG+ESGWVEART CDHL SLSSDL HIPTPDT C+RC HP ENWLCL CKDV
Sbjct: 18  EDDEN-DMYGAESGWVEARTSCDHLASLSSDLAHIPTPDTPCNRCQHPSENWLCLSCKDV 76

Query: 488 LCSRFVNKHMLEHSQQREHSLALSYSDLSVWCFSCDAYLDAQVILPLRPVYETAYILKFG 309
           LCSRFVNKHML+H  Q  H LALSYSDLS+WCF+CD+YLDA+VI+ L+PV ETA+ILKFG
Sbjct: 77  LCSRFVNKHMLQHFHQTSHCLALSYSDLSIWCFACDSYLDARVIIQLKPVSETAHILKFG 136

Query: 308 EAPPFRTV 285
           EAPPFR+V
Sbjct: 137 EAPPFRSV 144


>ref|XP_004152271.1| PREDICTED: histone deacetylase 6-like [Cucumis sativus]
           gi|449484341|ref|XP_004156856.1| PREDICTED: histone
           deacetylase 6-like [Cucumis sativus]
          Length = 146

 Score =  206 bits (524), Expect = 4e-51
 Identities = 95/125 (76%), Positives = 104/125 (83%)
 Frame = -3

Query: 665 DEELVQLYGSESGWVEARTHCDHLDSLSSDLTHIPTPDTACHRCDHPDENWLCLCCKDVL 486
           +EEL  LYG+ SGWV+A T CDHL SLSSDL HIP P T C +C +P ENW+CLCCKDV 
Sbjct: 24  EEEL--LYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVF 81

Query: 485 CSRFVNKHMLEHSQQREHSLALSYSDLSVWCFSCDAYLDAQVILPLRPVYETAYILKFGE 306
           CSRFVNKHML+H +Q  H LALSYSDLSVWCFSCDAYLDAQVI  LRPV+E AYILKFGE
Sbjct: 82  CSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGE 141

Query: 305 APPFR 291
           APPFR
Sbjct: 142 APPFR 146


Top