BLASTX nr result
ID: Panax21_contig00016352
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00016352
(950 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002316152.1| predicted protein [Populus trichocarpa] gi|2... 169 2e-79
ref|XP_004138818.1| PREDICTED: pentatricopeptide repeat-containi... 168 6e-76
ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containi... 161 3e-73
ref|XP_002532083.1| pentatricopeptide repeat-containing protein,... 161 3e-73
ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containi... 160 1e-71
>ref|XP_002316152.1| predicted protein [Populus trichocarpa] gi|222865192|gb|EEF02323.1|
predicted protein [Populus trichocarpa]
Length = 785
Score = 169 bits (428), Expect(4) = 2e-79
Identities = 82/127 (64%), Positives = 102/127 (80%), Gaps = 7/127 (5%)
Frame = -1
Query: 620 DDHVMVG-------NASAIMKIVEIVKRWRWGPDIETQLNKLRFVPNMIHITQALKIIGD 462
DDHVM+G NASA+ KIVE+VKRW+WGP++ETQL+KL+FVPNM H+ QALKII +
Sbjct: 75 DDHVMIGGLKKPILNASAVAKIVEVVKRWKWGPELETQLDKLQFVPNMTHVVQALKIINE 134
Query: 461 RVATLSLFQWAKRQSWYSPSDECYVTLFDMLNESRDFDRIQSMFDELIRASGEIGISSSF 282
A LSLF+WAKRQ+WY P+DECYV LFD LN+SRDFD IQS+FDE++ S I ++ F
Sbjct: 135 SDALLSLFKWAKRQTWYVPNDECYVMLFDGLNQSRDFDGIQSLFDEMVCDS--IKSATQF 192
Query: 281 SAYNRVI 261
SAYNRV+
Sbjct: 193 SAYNRVL 199
Score = 70.5 bits (171), Expect(4) = 2e-79
Identities = 31/43 (72%), Positives = 37/43 (86%)
Frame = -3
Query: 258 YLAKAKKLELTFFCFKMIQQSGCKVDTETYNSLITLFLKKGLP 130
YLAKA+KLE++F CFK +Q SGCK+DTETYN L+ LFL KGLP
Sbjct: 201 YLAKAEKLEVSFCCFKKVQDSGCKIDTETYNILMKLFLNKGLP 243
Score = 68.9 bits (167), Expect(4) = 2e-79
Identities = 35/44 (79%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Frame = -2
Query: 757 NSNVRSYCSGKNGE-GSNE*TEDIDYLDESGSFIYRGKGIRSVE 629
NS VR+YC+GKNGE GS E TEDI+YLDESGS IY GKGIRSVE
Sbjct: 28 NSFVRNYCAGKNGEAGSGEWTEDIEYLDESGSVIYSGKGIRSVE 71
Score = 56.6 bits (135), Expect(4) = 2e-79
Identities = 29/38 (76%), Positives = 29/38 (76%)
Frame = -2
Query: 127 AFEIYENTEVAGCLLDRSNYELMIPSLAKSGHLDAASK 14
AFEIYE E A C LD S YELMIPSLAKSG LDAA K
Sbjct: 246 AFEIYETMEAAHCSLDVSTYELMIPSLAKSGRLDAAFK 283
>ref|XP_004138818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Cucumis sativus]
gi|449490234|ref|XP_004158545.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Cucumis sativus]
Length = 823
Score = 168 bits (425), Expect(4) = 6e-76
Identities = 86/134 (64%), Positives = 103/134 (76%), Gaps = 9/134 (6%)
Frame = -1
Query: 620 DDHVMVG-------NASAIMKIVEIVKRWRWGPDIETQLNKLRFVPNMIHITQALKIIGD 462
DDHVMVG NASA+ KIVE+V+RW+WGP++E+QL KL+FVPNM HITQ LKII D
Sbjct: 112 DDHVMVGGLKKPFLNASAVAKIVEVVRRWKWGPELESQLEKLQFVPNMTHITQVLKIIDD 171
Query: 461 RVATLSLFQWAKRQSWYSPSDECYVTLFDMLNESRDFDRIQSMFDELIR--ASGEIGISS 288
A+LSLF+WAKRQSWYSP+DECY LFD LN+ RDFD IQ +FDE++R +S E +
Sbjct: 172 AEASLSLFRWAKRQSWYSPNDECYGLLFDGLNQRRDFDAIQLLFDEVVRDLSSDE---TV 228
Query: 287 SFSAYNRVIHIWQK 246
SFSAYNRVI K
Sbjct: 229 SFSAYNRVIQYLAK 242
Score = 69.7 bits (169), Expect(4) = 6e-76
Identities = 33/43 (76%), Positives = 37/43 (86%)
Frame = -3
Query: 258 YLAKAKKLELTFFCFKMIQQSGCKVDTETYNSLITLFLKKGLP 130
YLAKA+KLE++F CFK I SG KVDT+TYNSLITLFL KGLP
Sbjct: 239 YLAKAEKLEVSFCCFKKIHDSGFKVDTQTYNSLITLFLNKGLP 281
Score = 64.7 bits (156), Expect(4) = 6e-76
Identities = 32/46 (69%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Frame = -2
Query: 763 NNNSNVRSYCSGK-NGEGSNE*TEDIDYLDESGSFIYRGKGIRSVE 629
NN S RSYCSGK +G G E TEDI+YLDESGS I+ GKG+RSVE
Sbjct: 63 NNRSFTRSYCSGKESGNGGREWTEDIEYLDESGSVIFSGKGVRSVE 108
Score = 51.2 bits (121), Expect(4) = 6e-76
Identities = 26/38 (68%), Positives = 28/38 (73%)
Frame = -2
Query: 127 AFEIYENTEVAGCLLDRSNYELMIPSLAKSGHLDAASK 14
AFEIYE+ A C LD S +ELMIP LAKSG LDAA K
Sbjct: 284 AFEIYESMAGAECSLDASTFELMIPCLAKSGRLDAAMK 321
>ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Vitis vinifera]
Length = 844
Score = 161 bits (408), Expect(4) = 3e-73
Identities = 82/128 (64%), Positives = 97/128 (75%), Gaps = 8/128 (6%)
Frame = -1
Query: 620 DDHVMVG-------NASAIMKIVEIVKRWRWGPDIETQLNKLRFVPNMIHITQALKIIGD 462
DDHVMVG N SA+ KIVEIV RWRWGP++ETQL+KL FVPNM H+ QALKI+ D
Sbjct: 129 DDHVMVGGLKKPFLNVSAVAKIVEIVNRWRWGPELETQLDKLHFVPNMSHVIQALKIVTD 188
Query: 461 RVATLSLFQWAKRQSWYSP-SDECYVTLFDMLNESRDFDRIQSMFDELIRASGEIGISSS 285
A+LSLF+WAKRQ WYS +DECY LFD LN+SRDFD IQS+FDE+IR SG+ SS
Sbjct: 189 TDASLSLFRWAKRQPWYSMLNDECYALLFDRLNQSRDFDAIQSLFDEMIRDSGDNNGVSS 248
Query: 284 FSAYNRVI 261
A N+V+
Sbjct: 249 VIACNQVV 256
Score = 70.9 bits (172), Expect(4) = 3e-73
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = -3
Query: 255 LAKAKKLELTFFCFKMIQQSGCKVDTETYNSLITLFLKKGLP 130
LAKA+KLE+ F CFK +Q SGCK+DT TYNSLITLFL KGLP
Sbjct: 259 LAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLP 300
Score = 62.4 bits (150), Expect(4) = 3e-73
Identities = 30/38 (78%), Positives = 32/38 (84%)
Frame = -2
Query: 127 AFEIYENTEVAGCLLDRSNYELMIPSLAKSGHLDAASK 14
AFE+YE+ E AGCLLD S YELMIPSLAKSG LDAA K
Sbjct: 303 AFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFK 340
Score = 49.7 bits (117), Expect(4) = 3e-73
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 7/49 (14%)
Frame = -2
Query: 745 RSYCSGKNGEGSNE*T-------EDIDYLDESGSFIYRGKGIRSVESSL 620
R++CSG + + SN T ED++YLDESGS I+ GKG+RSV+ L
Sbjct: 80 RAFCSGNHHQNSNRSTSSSDWNQEDVEYLDESGSVIFTGKGVRSVDPGL 128
>ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528243|gb|EEF30297.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 841
Score = 161 bits (408), Expect(4) = 3e-73
Identities = 80/127 (62%), Positives = 98/127 (77%), Gaps = 7/127 (5%)
Frame = -1
Query: 620 DDHVMVG-------NASAIMKIVEIVKRWRWGPDIETQLNKLRFVPNMIHITQALKIIGD 462
DDHVMVG N +A+ KIVEIVKRW+WGP++ETQL+KL+FVP+M H+ QALKII D
Sbjct: 135 DDHVMVGGLKKPFLNVAAVAKIVEIVKRWKWGPELETQLDKLQFVPSMTHVVQALKIIND 194
Query: 461 RVATLSLFQWAKRQSWYSPSDECYVTLFDMLNESRDFDRIQSMFDELIRASGEIGISSSF 282
LSLF+WAKRQ+WY DECY LFD LN+ RDFD IQS+FDE+++ S + GISS +
Sbjct: 195 ADGMLSLFKWAKRQTWYVVDDECYALLFDGLNKIRDFDGIQSLFDEMVQDSSKGGISSVY 254
Query: 281 SAYNRVI 261
AYNRVI
Sbjct: 255 -AYNRVI 260
Score = 70.9 bits (172), Expect(4) = 3e-73
Identities = 31/43 (72%), Positives = 38/43 (88%)
Frame = -3
Query: 258 YLAKAKKLELTFFCFKMIQQSGCKVDTETYNSLITLFLKKGLP 130
+LAKA+KLEL+F CFK +Q SGCK+DT+TYN+LIT FL KGLP
Sbjct: 262 HLAKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFLNKGLP 304
Score = 57.0 bits (136), Expect(4) = 3e-73
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Frame = -2
Query: 745 RSYCSGKNGEG-SNE*TEDIDYLDESGSFIYRGKGIRSVESSL 620
R+YCSG EG S + TEDI+YLDESGS IY GKGIRSVE L
Sbjct: 92 RNYCSGNINEGGSAKWTEDIEYLDESGSVIYSGKGIRSVEPGL 134
Score = 55.1 bits (131), Expect(4) = 3e-73
Identities = 27/38 (71%), Positives = 29/38 (76%)
Frame = -2
Query: 127 AFEIYENTEVAGCLLDRSNYELMIPSLAKSGHLDAASK 14
AFEIYE+ + A C LD S YELMIPSLAKSG LD A K
Sbjct: 307 AFEIYESMQAAQCSLDASTYELMIPSLAKSGRLDVAFK 344
>ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Glycine max]
Length = 752
Score = 160 bits (405), Expect(4) = 1e-71
Identities = 80/132 (60%), Positives = 101/132 (76%), Gaps = 7/132 (5%)
Frame = -1
Query: 620 DDHVMVG-------NASAIMKIVEIVKRWRWGPDIETQLNKLRFVPNMIHITQALKIIGD 462
DDHVMVG NA A+ KIVE+VKRW+WGP+++TQL+KL+FVPNM HI QALK++GD
Sbjct: 42 DDHVMVGEVKKPFVNALAVAKIVEVVKRWKWGPELDTQLDKLQFVPNMTHIAQALKVVGD 101
Query: 461 RVATLSLFQWAKRQSWYSPSDECYVTLFDMLNESRDFDRIQSMFDELIRASGEIGISSSF 282
A LSLF+WAKRQ+WY PSD+CYV LFD LN+ RDF+ IQ +FDE++ S + G+ S F
Sbjct: 102 VDACLSLFRWAKRQAWYVPSDDCYVMLFDGLNQKRDFEGIQLLFDEMVGDSAD-GV-SLF 159
Query: 281 SAYNRVIHIWQK 246
+A NRVI K
Sbjct: 160 AACNRVIRYLAK 171
Score = 73.2 bits (178), Expect(4) = 1e-71
Identities = 34/43 (79%), Positives = 38/43 (88%)
Frame = -3
Query: 258 YLAKAKKLELTFFCFKMIQQSGCKVDTETYNSLITLFLKKGLP 130
YLAKA+KLE++F CFK I +GCKVDTETYNSLITLFL KGLP
Sbjct: 168 YLAKAEKLEVSFCCFKKILNAGCKVDTETYNSLITLFLNKGLP 210
Score = 57.4 bits (137), Expect(4) = 1e-71
Identities = 28/38 (73%), Positives = 31/38 (81%)
Frame = -2
Query: 127 AFEIYENTEVAGCLLDRSNYELMIPSLAKSGHLDAASK 14
AFE+YE+ E AGC LD S YELMIP+LAKSG LDAA K
Sbjct: 213 AFEMYESMEKAGCSLDGSTYELMIPNLAKSGRLDAAFK 250
Score = 48.5 bits (114), Expect(4) = 1e-71
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = -2
Query: 748 VRSYCSGKNGEGSNE*TEDIDYLDESGSFIYRGKGIRSVE 629
+R YC G + E TE+I+YLDESG IY+GKG+RSVE
Sbjct: 1 MRCYCHDSGG--AKEWTEEIEYLDESGGVIYKGKGVRSVE 38