BLASTX nr result

ID: Panax21_contig00016346 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00016346
         (832 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding prote...   196   5e-48
ref|XP_002302963.1| predicted protein [Populus trichocarpa] gi|2...   140   4e-31
ref|XP_002532469.1| double-stranded RNA binding protein, putativ...   127   2e-27
ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798...   110   4e-22
ref|XP_004149792.1| PREDICTED: uncharacterized protein LOC101213...   100   7e-19

>ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding protein 4-like [Vitis
           vinifera] gi|296087161|emb|CBI33535.3| unnamed protein
           product [Vitis vinifera]
          Length = 333

 Score =  196 bits (498), Expect = 5e-48
 Identities = 118/241 (48%), Positives = 150/241 (62%), Gaps = 3/241 (1%)
 Frame = -1

Query: 826 PLIQEDSVFCKSILNEYAAKLHVEKPIYKTEELEGLLPVFVSSVVFNGKLYVGKKGRNKK 647
           PLI+ED+VFCKSILNE+A K+++EKP Y T + EGLLPVFVSS+VFNG  Y G  GRNKK
Sbjct: 99  PLIREDTVFCKSILNEFAVKMNLEKPTYTTVQPEGLLPVFVSSLVFNGVTYTGDAGRNKK 158

Query: 646 ESQQLAARAVILSSL-DSESGTVIAEIIKSKSKLYVALDKLKNSCNTQNSGVPVGIQAGS 470
           E++QLAAR VILS L +S SGT+++EIIKSK KLY AL ++K+        +P+G+ +  
Sbjct: 159 EAEQLAARTVILSILGNSGSGTLLSEIIKSKVKLYAALHRVKDPSYIHTGILPIGLTS-- 216

Query: 469 NLGITESKGNEFEVVAVNNSMPRTALQEPCTGNSTNISATHTPLHEFRPPKAETSSAFEA 290
             GI   KG E EV    + +  TA+  P +G   ++  TH P+HE   PK   SS  E 
Sbjct: 217 --GIPPCKGKEVEVAPGTDQLLPTAVSVPLSGQLVHVPVTHPPVHELEKPKPNVSS--EV 272

Query: 289 ITTPIIFVPPTSEQ-LVVGSTSG-XXXXXXXXXXXXKVGVDAQLQVIVVSSGQPSPCSVV 116
           I  PI FVP   EQ LVV  T+G             K+  DAQL V V+   Q SPCSV 
Sbjct: 273 IAPPISFVPSVFEQPLVVSPTTGRKRNRKNKKKANKKLRTDAQLPVAVLPLNQASPCSVA 332

Query: 115 R 113
           +
Sbjct: 333 Q 333


>ref|XP_002302963.1| predicted protein [Populus trichocarpa] gi|222844689|gb|EEE82236.1|
           predicted protein [Populus trichocarpa]
          Length = 452

 Score =  140 bits (353), Expect = 4e-31
 Identities = 82/192 (42%), Positives = 116/192 (60%), Gaps = 1/192 (0%)
 Frame = -1

Query: 826 PLIQEDSVFCKSILNEYAAKLHVEKPIYKTEELEGLLPVFVSSVVFNGKLYVGKKGRNKK 647
           PL+  D+VFCKSILNE+A K++ EKP Y T +  GLLPVF+S++VF+G  Y G  GRNKK
Sbjct: 216 PLLLGDTVFCKSILNEFAVKVNREKPTYNTVQSPGLLPVFISTLVFDGVSYTGDAGRNKK 275

Query: 646 ESQQLAARAVILSSL-DSESGTVIAEIIKSKSKLYVALDKLKNSCNTQNSGVPVGIQAGS 470
           E++QLAARAVILS + +S S  ++ EIIKSKSKLY ALD++K+  ++Q + VPV ++ G 
Sbjct: 276 EAEQLAARAVILSLIGNSGSSKILYEIIKSKSKLYAALDRVKDPSHSQPNIVPVAVKVGH 335

Query: 469 NLGITESKGNEFEVVAVNNSMPRTALQEPCTGNSTNISATHTPLHEFRPPKAETSSAFEA 290
               T  +  E     V ++ P +A   P      + S T     +      E S+A   
Sbjct: 336 CSETTVDQEQEVSTAVVRDAAPVSANIVPVAVKVGHCSETTVDQEQ------EVSTAVVR 389

Query: 289 ITTPIIFVPPTS 254
              P+  +PP +
Sbjct: 390 DAVPVSAIPPAA 401


>ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis]
           gi|223527827|gb|EEF29925.1| double-stranded RNA binding
           protein, putative [Ricinus communis]
          Length = 289

 Score =  127 bits (320), Expect = 2e-27
 Identities = 87/192 (45%), Positives = 107/192 (55%), Gaps = 1/192 (0%)
 Frame = -1

Query: 814 EDSVFCKSILNEYAAKLHVEKPIYKTEELEGLLPVFVSSVVFNGKLYVGKKGRNKKESQQ 635
           ED+V CKSILNEYA K+ +E P Y T +  GL P+FVSS VFNG  Y G  GR KKE++Q
Sbjct: 96  EDTVACKSILNEYAVKMQLEMPTYNTVKQGGLFPIFVSSSVFNGVTYNGDIGRTKKEAEQ 155

Query: 634 LAARAVILSSL-DSESGTVIAEIIKSKSKLYVALDKLKNSCNTQNSGVPVGIQAGSNLGI 458
           LAARA +LS L + ESG +I++  KSK KLYV   K  +S + QNS +PV          
Sbjct: 156 LAARAAVLSLLRNVESGEIISKFFKSKRKLYVGFHK-SDSQDAQNSNMPV---------- 204

Query: 457 TESKGNEFEVVAVNNSMPRTALQEPCTGNSTNISATHTPLHEFRPPKAETSSAFEAITTP 278
              K  + E + V+N +P   + E         SA H P HEF   K E     E I  P
Sbjct: 205 -VGKDIKTEALMVSNVVP---IPEAA-------SALHPPHHEFTKTKPE--KICEGIDLP 251

Query: 277 IIFVPPTSEQLV 242
           I FV P S Q V
Sbjct: 252 IAFVHPVSGQSV 263


>ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798730 [Glycine max]
          Length = 434

 Score =  110 bits (275), Expect = 4e-22
 Identities = 68/150 (45%), Positives = 91/150 (60%), Gaps = 3/150 (2%)
 Frame = -1

Query: 823 LIQEDSVFCKSILNEYAAKLHVEKPIYKTEE--LEGLLPVFVSSVVFNGKLYVGKKGRNK 650
           L+ + S F KSI+NEYA KLHVE+P Y T++  L G+LP+F++S+VFNG  Y G   R K
Sbjct: 79  LVNQISPFSKSIMNEYADKLHVEQPTYNTDQQQLGGVLPIFITSLVFNGTSYTGDPARTK 138

Query: 649 KESQQLAARAVILSSL-DSESGTVIAEIIKSKSKLYVALDKLKNSCNTQNSGVPVGIQAG 473
           KE++Q AA+A ILS + DS SGTV+ EIIKSKS  Y A+ K K    +Q S V     AG
Sbjct: 139 KEAEQSAAKAAILSIMGDSSSGTVLVEIIKSKSIFYDAI-KGKGRSLSQPSAVLSTTNAG 197

Query: 472 SNLGITESKGNEFEVVAVNNSMPRTALQEP 383
                 + K  E      +N+   T ++ P
Sbjct: 198 QISITLDHKDTEVAACVADNNNNETKVEFP 227


>ref|XP_004149792.1| PREDICTED: uncharacterized protein LOC101213863 [Cucumis sativus]
          Length = 385

 Score = 99.8 bits (247), Expect = 7e-19
 Identities = 72/243 (29%), Positives = 120/243 (49%), Gaps = 6/243 (2%)
 Frame = -1

Query: 823 LIQEDSVFCKSILNEYAAKLHVEKPIYKTEELEGLLPVFVSSVVFNGKLYVGKKGRNKKE 644
           L++ED + CKSIL+EY  K+ +E+PIY T+  +G +  F S++VF+G +Y    GR KKE
Sbjct: 155 LLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKE 214

Query: 643 SQQLAARAVILS----SLDSESGTVIAEIIKSKSKLYVALDKLKNSCNTQNSGVPVGIQA 476
           ++QLAARA ILS    + + +S   + +II SK + +  L K+K+S  +Q     +    
Sbjct: 215 AEQLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENT 274

Query: 475 GSNLGITESKGNEFEVVAVNNSMPRTALQEPCTGNSTNISATHTPLHEFRPPKAET--SS 302
              + +T ++G E +   ++  M   A+ E C            P  +F+P  + T    
Sbjct: 275 VERVAMTVNEGKELKDAVLDGGMVCGAISEAC------------PTSQFQPEFSATKPDG 322

Query: 301 AFEAITTPIIFVPPTSEQLVVGSTSGXXXXXXXXXXXXKVGVDAQLQVIVVSSGQPSPCS 122
           +   +  PI FV  T E+ V    +             +  +  + +V   +S   +PCS
Sbjct: 323 SSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCS 382

Query: 121 VVR 113
           V R
Sbjct: 383 VAR 385


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