BLASTX nr result

ID: Panax21_contig00016325 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00016325
         (543 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273814.1| PREDICTED: DNA repair and recombination prot...   259   1e-67
emb|CAN62867.1| hypothetical protein VITISV_015925 [Vitis vinifera]   259   1e-67
ref|XP_003540522.1| PREDICTED: DNA repair protein rhp54-like [Gl...   256   2e-66
ref|XP_002275596.1| PREDICTED: DNA repair and recombination prot...   254   8e-66
ref|XP_004170971.1| PREDICTED: SWI/SNF-related matrix-associated...   246   1e-63

>ref|XP_002273814.1| PREDICTED: DNA repair and recombination protein RAD54-like [Vitis
            vinifera]
          Length = 903

 Score =  259 bits (663), Expect = 1e-67
 Identities = 133/185 (71%), Positives = 152/185 (82%), Gaps = 5/185 (2%)
 Frame = -3

Query: 541  VIQDLREMTRKVLHYYKGDFLDELPGLVDFTVFLNLSPRQKREVKELKKLGRKFKINSDG 362
            VIQDLREMT KVLHYYKGDFLDELPGLVDFTV LNLS RQK+EV  L K  RKFK NS G
Sbjct: 605  VIQDLREMTSKVLHYYKGDFLDELPGLVDFTVLLNLSARQKKEVGNLNKFERKFKKNSVG 664

Query: 361  SAIYVHPQLKY----LTKNSGVKDRVD-QLKIDEMLEKLDEKEGVKAKFYLNLLRLCDSS 197
            SA+Y+HPQLKY    L  N    D +  Q K+DE+LE+LD ++GVKAKF+LN+L LC SS
Sbjct: 665  SAVYLHPQLKYFAEKLAANESKTDEMTCQKKMDEILEQLDVRDGVKAKFFLNVLALCQSS 724

Query: 196  GEKLLVFSQYLLPIKFLERLTVKVKGWSPGKEVFMITGDSDSEVRESHMDRFNNSPDARV 17
            GEKLLVFSQYLLP++FLE+LT+KVKGWSPGKE+F I+G+S SE RE  M+RFN SPDARV
Sbjct: 725  GEKLLVFSQYLLPLRFLEKLTMKVKGWSPGKEIFAISGESSSEQREWSMERFNTSPDARV 784

Query: 16   FFGSI 2
            FFGSI
Sbjct: 785  FFGSI 789


>emb|CAN62867.1| hypothetical protein VITISV_015925 [Vitis vinifera]
          Length = 1187

 Score =  259 bits (663), Expect = 1e-67
 Identities = 133/185 (71%), Positives = 152/185 (82%), Gaps = 5/185 (2%)
 Frame = -3

Query: 541  VIQDLREMTRKVLHYYKGDFLDELPGLVDFTVFLNLSPRQKREVKELKKLGRKFKINSDG 362
            VIQDLREMT KVLHYYKGDFLDELPGLVDFTV LNLS RQK+EV  L K  RKFK NS G
Sbjct: 831  VIQDLREMTSKVLHYYKGDFLDELPGLVDFTVLLNLSARQKKEVGNLNKFERKFKKNSVG 890

Query: 361  SAIYVHPQLKY----LTKNSGVKDRVD-QLKIDEMLEKLDEKEGVKAKFYLNLLRLCDSS 197
            SA+Y+HPQLKY    L  N    D +  Q K+DE+LE+LD ++GVKAKF+LN+L LC SS
Sbjct: 891  SAVYLHPQLKYFAEKLAANESKTDEMTCQKKMDEILEQLDVRDGVKAKFFLNVLALCQSS 950

Query: 196  GEKLLVFSQYLLPIKFLERLTVKVKGWSPGKEVFMITGDSDSEVRESHMDRFNNSPDARV 17
            GEKLLVFSQYLLP++FLE+LT+KVKGWSPGKE+F I+G+S SE RE  M+RFN SPDARV
Sbjct: 951  GEKLLVFSQYLLPLRFLEKLTMKVKGWSPGKEIFAISGESSSEQREWSMERFNTSPDARV 1010

Query: 16   FFGSI 2
            FFGSI
Sbjct: 1011 FFGSI 1015


>ref|XP_003540522.1| PREDICTED: DNA repair protein rhp54-like [Glycine max]
          Length = 883

 Score =  256 bits (654), Expect = 2e-66
 Identities = 127/181 (70%), Positives = 155/181 (85%), Gaps = 1/181 (0%)
 Frame = -3

Query: 541  VIQDLREMTRKVLHYYKGDFLDELPGLVDFTVFLNLSPRQKREVKELKKLGR-KFKINSD 365
            VIQDLREMT KVLHYYKGDFLDELPGLVDFTV L LSPRQK E+++LKKL R KFKINS 
Sbjct: 590  VIQDLREMTSKVLHYYKGDFLDELPGLVDFTVVLTLSPRQKPEIQKLKKLSRRKFKINSV 649

Query: 364  GSAIYVHPQLKYLTKNSGVKDRVDQLKIDEMLEKLDEKEGVKAKFYLNLLRLCDSSGEKL 185
            GSA+Y+HP+LK L +N G     D + +D+++EKLD ++GVK+KFY N+L LC+S+GEKL
Sbjct: 650  GSAVYLHPKLKPLAENCGENSTSDNI-MDDLIEKLDMRDGVKSKFYYNMLNLCESAGEKL 708

Query: 184  LVFSQYLLPIKFLERLTVKVKGWSPGKEVFMITGDSDSEVRESHMDRFNNSPDARVFFGS 5
            LVFSQYLLP+K+LERLT+K KGWS G+E+F+I+G+S SE RE  M++FNNSPDARVFFGS
Sbjct: 709  LVFSQYLLPLKYLERLTMKWKGWSLGREIFVISGESSSEQREWSMEKFNNSPDARVFFGS 768

Query: 4    I 2
            I
Sbjct: 769  I 769


>ref|XP_002275596.1| PREDICTED: DNA repair and recombination protein RAD54-like [Vitis
            vinifera]
          Length = 944

 Score =  254 bits (648), Expect = 8e-66
 Identities = 130/185 (70%), Positives = 150/185 (81%), Gaps = 5/185 (2%)
 Frame = -3

Query: 541  VIQDLREMTRKVLHYYKGDFLDELPGLVDFTVFLNLSPRQKREVKELKKLGRKFKINSDG 362
            VIQDLREMT KVLHYYKGDFLDELPGLVDFTV LNLS RQK+EV  L K  RKFK NS G
Sbjct: 646  VIQDLREMTSKVLHYYKGDFLDELPGLVDFTVLLNLSARQKKEVGNLNKFERKFKKNSVG 705

Query: 361  SAIYVHPQLKY----LTKNSGVKDRVD-QLKIDEMLEKLDEKEGVKAKFYLNLLRLCDSS 197
            SA+Y+HPQLKY    L  N    D +  Q K+DE+LE+LD +EGVK KF+LN+L LC S+
Sbjct: 706  SAVYLHPQLKYFAEKLAANESKTDEMTYQKKMDEILEQLDVREGVKVKFFLNVLALCQSA 765

Query: 196  GEKLLVFSQYLLPIKFLERLTVKVKGWSPGKEVFMITGDSDSEVRESHMDRFNNSPDARV 17
            GEKLLVFSQYLLP++FLE+LT+KV GWS GKE+F+I+G+S SE RE  M+RFN SPDARV
Sbjct: 766  GEKLLVFSQYLLPLRFLEKLTMKVNGWSSGKEIFVISGESSSEQREWSMERFNTSPDARV 825

Query: 16   FFGSI 2
            FFGSI
Sbjct: 826  FFGSI 830


>ref|XP_004170971.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A containing DEAD/H box
            1B-like [Cucumis sativus]
          Length = 903

 Score =  246 bits (629), Expect = 1e-63
 Identities = 120/180 (66%), Positives = 148/180 (82%)
 Frame = -3

Query: 541  VIQDLREMTRKVLHYYKGDFLDELPGLVDFTVFLNLSPRQKREVKELKKLGRKFKINSDG 362
            VI DLREMT K+LHYYKGDFLDELPGLVDFTV LNL+ +QK E +++KK  RKFKI+S G
Sbjct: 614  VIHDLREMTSKILHYYKGDFLDELPGLVDFTVVLNLTSKQKHEGEKVKKFNRKFKISSAG 673

Query: 361  SAIYVHPQLKYLTKNSGVKDRVDQLKIDEMLEKLDEKEGVKAKFYLNLLRLCDSSGEKLL 182
            SA+Y+HP+L   + N+ V D     KIDE+++K+D K+GVK KF+LNLL LC ++GEKLL
Sbjct: 674  SAVYLHPKLNVFSVNAAVTDD----KIDEVIDKMDVKDGVKTKFFLNLLNLCATTGEKLL 729

Query: 181  VFSQYLLPIKFLERLTVKVKGWSPGKEVFMITGDSDSEVRESHMDRFNNSPDARVFFGSI 2
            VFSQYLLP+KF+ERL V+ KGWSPG+E FMI+G++  E RE  M+RFNNSPDARVFFGSI
Sbjct: 730  VFSQYLLPLKFMERLVVQKKGWSPGRETFMISGETTPEQREWSMERFNNSPDARVFFGSI 789


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