BLASTX nr result

ID: Panax21_contig00016084 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00016084
         (610 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN79659.1| hypothetical protein VITISV_014509 [Vitis vinifera]   107   1e-21
ref|XP_002279844.1| PREDICTED: poly(A) polymerase [Vitis vinifer...   107   2e-21
ref|XP_002882480.1| polynucleotide adenylyltransferase [Arabidop...   100   3e-19
ref|XP_002519259.1| poly(A) polymerase, putative [Ricinus commun...    93   3e-18
ref|XP_002311376.1| predicted protein [Populus trichocarpa] gi|2...    96   6e-18

>emb|CAN79659.1| hypothetical protein VITISV_014509 [Vitis vinifera]
          Length = 604

 Score =  107 bits (268), Expect = 1e-21
 Identities = 49/94 (52%), Positives = 68/94 (72%), Gaps = 6/94 (6%)
 Frame = -3

Query: 608 LEEVQGMCDPNPSEYFDLGVPKPNIVFYWALQNGKGNFTDIHCVEEEFMKNISN-GYEGP 432
           +EEVQG+CDPNP+E+ D    +PN+VF+W +Q G+ NF+DI  VE++FM+NI+N GY+GP
Sbjct: 475 VEEVQGLCDPNPTEFIDPDAGEPNVVFFWGVQPGRINFSDIDVVEDDFMQNINNGGYQGP 534

Query: 431 PGGMTLSIVEASQVPKNVHC-----NGTKACWRV 345
           PG M LS++  SQ+P          N TKACWR+
Sbjct: 535 PGKMNLSVIPTSQLPGYAXLDTGSRNRTKACWRM 568


>ref|XP_002279844.1| PREDICTED: poly(A) polymerase [Vitis vinifera]
           gi|296083219|emb|CBI22855.3| unnamed protein product
           [Vitis vinifera]
          Length = 563

 Score =  107 bits (266), Expect = 2e-21
 Identities = 49/94 (52%), Positives = 67/94 (71%), Gaps = 6/94 (6%)
 Frame = -3

Query: 608 LEEVQGMCDPNPSEYFDLGVPKPNIVFYWALQNGKGNFTDIHCVEEEFMKNISN-GYEGP 432
           +EEVQG+CDPNP+E+ D     PN+VF+W +Q G+ NF+DI  VE++FM+NI+N GY+GP
Sbjct: 434 VEEVQGLCDPNPTEFIDPDAGGPNVVFFWGVQPGRINFSDIDVVEDDFMQNINNGGYQGP 493

Query: 431 PGGMTLSIVEASQVPKNVHC-----NGTKACWRV 345
           PG M LS++  SQ+P          N TKACWR+
Sbjct: 494 PGKMNLSVIPTSQLPGYAQLDTGSRNRTKACWRM 527


>ref|XP_002882480.1| polynucleotide adenylyltransferase [Arabidopsis lyrata subsp.
           lyrata] gi|297328320|gb|EFH58739.1| polynucleotide
           adenylyltransferase [Arabidopsis lyrata subsp. lyrata]
          Length = 507

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 48/98 (48%), Positives = 65/98 (66%), Gaps = 8/98 (8%)
 Frame = -3

Query: 608 LEEVQGMCDPNPSEYFDLGVPKPNIVFYWALQNGKGNFTDIHCVEEEFMKNISNG-YEGP 432
           +EEV G+CDPNP+EY +    +PNIVFYW LQ    N +DI  VE EF+KN+++G ++GP
Sbjct: 376 IEEVYGICDPNPTEYVETYTKQPNIVFYWGLQLRTINVSDIESVETEFLKNLNSGSFQGP 435

Query: 431 PGGMTLSIVEASQVPKNVHCNG-------TKACWRVSE 339
            G + LS+V+ SQ+PKN  C         TK CWR+ E
Sbjct: 436 VGRIQLSVVKESQLPKNGECASNNRSKKVTKTCWRIRE 473


>ref|XP_002519259.1| poly(A) polymerase, putative [Ricinus communis]
           gi|223541574|gb|EEF43123.1| poly(A) polymerase, putative
           [Ricinus communis]
          Length = 492

 Score = 92.8 bits (229), Expect(2) = 3e-18
 Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 5/93 (5%)
 Frame = -3

Query: 608 LEEVQGMCDPNPSEYFDLGVPKPNIVFYWALQNGKGNFTDIHCVEEEFMKNISNGYEGPP 429
           LE +QG CDP+P EY D  V +PN+VFYW L   + N+ D+  VEE+F++NI +GY G  
Sbjct: 365 LEGLQGQCDPSPVEYADRDVSEPNVVFYWGLNPSRSNYIDLESVEEDFLRNIYSGYHGTR 424

Query: 428 GGMTLSIVEASQVPKNVHCNG-----TKACWRV 345
             + LSIV+A+++PKN   N       KA W+V
Sbjct: 425 RKLELSIVKAAELPKNAQFNSGNGKKMKAYWKV 457



 Score = 24.6 bits (52), Expect(2) = 3e-18
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
 Frame = -1

Query: 328 HLPHYY----STNGYPEYPSAGG 272
           HLP Y+    +TNG  E PS GG
Sbjct: 470 HLPGYFVGYLATNGDTECPSCGG 492


>ref|XP_002311376.1| predicted protein [Populus trichocarpa] gi|222851196|gb|EEE88743.1|
           predicted protein [Populus trichocarpa]
          Length = 483

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 46/93 (49%), Positives = 59/93 (63%), Gaps = 5/93 (5%)
 Frame = -3

Query: 608 LEEVQGMCDPNPSEYFDLGVPKPNIVFYWALQNGKGNFTDIHCVEEEFMKNISNGYEGPP 429
           LE VQG CDPNP EY D+   +PN+VFYW L   + NF  I  VEE+F ++I  GY G  
Sbjct: 355 LEAVQGFCDPNPMEYVDMDASEPNVVFYWGLNRSRCNFVYIEPVEEDFSRSIYCGYYGIR 414

Query: 428 GGMTLSIVEASQVPKNVHCNG-----TKACWRV 345
           G M LSIV+AS++PKN   +       KACW++
Sbjct: 415 GKMELSIVQASELPKNARFDSGNGKKMKACWKM 447


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