BLASTX nr result
ID: Panax21_contig00015820
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00015820
(1423 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containi... 87 9e-27
emb|CBI28351.3| unnamed protein product [Vitis vinifera] 87 9e-27
ref|XP_002523781.1| pentatricopeptide repeat-containing protein,... 77 3e-21
ref|NP_180329.1| pentatricopeptide repeat-containing protein [Ar... 63 1e-15
ref|XP_002879150.1| pentatricopeptide repeat-containing protein ... 63 2e-15
>ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 87.0 bits (214), Expect(3) = 9e-27
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = -2
Query: 366 AGFVTNGLGLEALELFYRLRLAGVNLTQPIFVTVIKLCANLKEVDFARQLHSRVI 202
AGFVTNGL LEA ELFYR+RL GV LTQ IF TVIKLCAN+KE+ FA+QLH +VI
Sbjct: 267 AGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVI 321
Score = 58.2 bits (139), Expect(3) = 9e-27
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = -3
Query: 140 KCSEMNDAFKLFCTNHRVHNVVTWTAVISGYLKN 39
KCSE++DAFKLFC H V NVV+WTA+ISGY++N
Sbjct: 341 KCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQN 374
Score = 23.1 bits (48), Expect(3) = 9e-27
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 202 MKSGFESDPNIRTALMV 152
+K+G + D NI+TALMV
Sbjct: 321 IKNGSDFDLNIKTALMV 337
>emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 87.0 bits (214), Expect(3) = 9e-27
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = -2
Query: 366 AGFVTNGLGLEALELFYRLRLAGVNLTQPIFVTVIKLCANLKEVDFARQLHSRVI 202
AGFVTNGL LEA ELFYR+RL GV LTQ IF TVIKLCAN+KE+ FA+QLH +VI
Sbjct: 267 AGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVI 321
Score = 58.2 bits (139), Expect(3) = 9e-27
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = -3
Query: 140 KCSEMNDAFKLFCTNHRVHNVVTWTAVISGYLKN 39
KCSE++DAFKLFC H V NVV+WTA+ISGY++N
Sbjct: 341 KCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQN 374
Score = 23.1 bits (48), Expect(3) = 9e-27
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 202 MKSGFESDPNIRTALMV 152
+K+G + D NI+TALMV
Sbjct: 321 IKNGSDFDLNIKTALMV 337
>ref|XP_002523781.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536869|gb|EEF38507.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 661
Score = 77.0 bits (188), Expect(3) = 3e-21
Identities = 37/57 (64%), Positives = 46/57 (80%)
Frame = -2
Query: 372 IAAGFVTNGLGLEALELFYRLRLAGVNLTQPIFVTVIKLCANLKEVDFARQLHSRVI 202
+ AG+V NGL LEA+E+FY LRLAGV LT IF +VIK CAN+KE+ FARQLH +V+
Sbjct: 270 MVAGYVANGLYLEAIEMFYHLRLAGVKLTNFIFSSVIKSCANIKELGFARQLHGQVL 326
Score = 43.5 bits (101), Expect(3) = 3e-21
Identities = 18/34 (52%), Positives = 27/34 (79%)
Frame = -3
Query: 140 KCSEMNDAFKLFCTNHRVHNVVTWTAVISGYLKN 39
K E++DAFK+F + + NVV+WTA+ISG+L+N
Sbjct: 346 KGREIDDAFKIFSMMYGIRNVVSWTAIISGHLQN 379
Score = 28.9 bits (63), Expect(3) = 3e-21
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -1
Query: 202 MKSGFESDPNIRTALMV 152
+K GFE D NIRTALMV
Sbjct: 326 LKGGFEYDHNIRTALMV 342
>ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g27610 gi|3860271|gb|AAC73039.1| putative
selenium-binding protein [Arabidopsis thaliana]
gi|330252926|gb|AEC08020.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 868
Score = 63.2 bits (152), Expect(3) = 1e-15
Identities = 30/55 (54%), Positives = 39/55 (70%)
Frame = -2
Query: 366 AGFVTNGLGLEALELFYRLRLAGVNLTQPIFVTVIKLCANLKEVDFARQLHSRVI 202
+G+ NGL LEAL +FY +RL V L++ F +VIKLCANLKE+ F QLH V+
Sbjct: 268 SGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVV 322
Score = 42.0 bits (97), Expect(3) = 1e-15
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = -3
Query: 140 KCSEMNDAFKLFCTNHRVHNVVTWTAVISGYLKNSDKSK 24
KC+ M DA +LF V NVV+WTA+ISG+L+N K +
Sbjct: 342 KCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEE 380
Score = 25.0 bits (53), Expect(3) = 1e-15
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -1
Query: 202 MKSGFESDPNIRTALMV 152
+K GF D NIRTALMV
Sbjct: 322 VKYGFLFDQNIRTALMV 338
>ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297324989|gb|EFH55409.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 872
Score = 63.2 bits (152), Expect(3) = 2e-15
Identities = 29/55 (52%), Positives = 39/55 (70%)
Frame = -2
Query: 366 AGFVTNGLGLEALELFYRLRLAGVNLTQPIFVTVIKLCANLKEVDFARQLHSRVI 202
+G+ NGL LEAL +FY +RL V L++ F ++IKLCANLKE+ F QLH V+
Sbjct: 272 SGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVV 326
Score = 41.2 bits (95), Expect(3) = 2e-15
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = -3
Query: 140 KCSEMNDAFKLFCTNHRVHNVVTWTAVISGYLKNSDKSK 24
KC M DA +LF + NVV+WTA+ISG+L+N K +
Sbjct: 346 KCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEE 384
Score = 25.4 bits (54), Expect(3) = 2e-15
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -1
Query: 202 MKSGFESDPNIRTALMV 152
+K GF D NIRTALMV
Sbjct: 326 VKYGFVFDQNIRTALMV 342