BLASTX nr result

ID: Panax21_contig00015542 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00015542
         (813 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283991.1| PREDICTED: uncharacterized protein LOC100264...   179   6e-43
ref|XP_002511168.1| conserved hypothetical protein [Ricinus comm...   172   6e-41
ref|XP_002318134.1| predicted protein [Populus trichocarpa] gi|1...   169   9e-40
ref|XP_004138044.1| PREDICTED: mediator of RNA polymerase II tra...   167   3e-39
ref|XP_002321708.1| predicted protein [Populus trichocarpa] gi|2...   165   1e-38

>ref|XP_002283991.1| PREDICTED: uncharacterized protein LOC100264705 [Vitis vinifera]
           gi|147789866|emb|CAN73869.1| hypothetical protein
           VITISV_001275 [Vitis vinifera]
           gi|297734439|emb|CBI15686.3| unnamed protein product
           [Vitis vinifera]
          Length = 174

 Score =  179 bits (454), Expect = 6e-43
 Identities = 104/180 (57%), Positives = 120/180 (66%)
 Frame = +2

Query: 50  KTTQELAMEGQKHLEETIEAEFQILSSMNDELCXXXXXXXXXXXXXXXXXXXXXGHNHHS 229
           K TQELA+EGQKHLEETIE+ FQILSSMNDELC                       + HS
Sbjct: 7   KATQELALEGQKHLEETIESAFQILSSMNDELCNPTLWSTPPPPATAA--------SSHS 58

Query: 230 SINGTNGDVSSDSXXXXXXXFELGGGALDEARLRYKSSVASLRSLLTTIPTSRKAKPYEX 409
           S +  NGD SSD           GGGALD+ARLRYKSSVASLR++L  I +S+KAK +E 
Sbjct: 59  SAS-LNGDASSDFSHHMEIA---GGGALDDARLRYKSSVASLRAVLNAIQSSQKAKAFEA 114

Query: 410 XXXXXXXXXPMDQDDIEKLEERASTLRKELVNKNKHLKILIDQLRELITDVSTWQSPCSV 589
                      DQ +IEKLEERAS LRKEL +KNK+LK+LIDQLR+LITD+STWQSPCSV
Sbjct: 115 SSAASGSASQADQAEIEKLEERASNLRKELADKNKYLKLLIDQLRDLITDISTWQSPCSV 174


>ref|XP_002511168.1| conserved hypothetical protein [Ricinus communis]
           gi|223550283|gb|EEF51770.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 196

 Score =  172 bits (437), Expect = 6e-41
 Identities = 102/195 (52%), Positives = 120/195 (61%), Gaps = 9/195 (4%)
 Frame = +2

Query: 32  STNLEQKTTQELAMEGQKHLEETIEAEFQILSSMNDELCXXXXXXXXXXXXXXXXXXXXX 211
           ST  + KTTQELAMEGQKHLEETI+A +QILSSMNDELC                     
Sbjct: 7   STITQSKTTQELAMEGQKHLEETIQAAYQILSSMNDELCNPTLWSTTSSSNNTTSPISAP 66

Query: 212 GHNHHSSINGT-NGDVSSDSXXXXXXXFE--------LGGGALDEARLRYKSSVASLRSL 364
            +++  S NG  NGD  SD+                  G GALDEAR RYK+SVA+LR +
Sbjct: 67  ANSNSLSQNGVVNGDSVSDAVVAHHFDGTGTGVVGGGTGNGALDEARFRYKNSVAALREV 126

Query: 365 LTTIPTSRKAKPYEXXXXXXXXXXPMDQDDIEKLEERASTLRKELVNKNKHLKILIDQLR 544
           L  IP S KA  +E          P D+ D+EKLEE+AS LRKEL NKN +LK+LIDQLR
Sbjct: 127 LAAIPNSHKAISFETSSSS-----PADEADVEKLEEQASNLRKELFNKNAYLKLLIDQLR 181

Query: 545 ELITDVSTWQSPCSV 589
           +LITD+STWQSPCSV
Sbjct: 182 DLITDISTWQSPCSV 196


>ref|XP_002318134.1| predicted protein [Populus trichocarpa] gi|118486707|gb|ABK95190.1|
           unknown [Populus trichocarpa]
           gi|222858807|gb|EEE96354.1| predicted protein [Populus
           trichocarpa]
          Length = 185

 Score =  169 bits (427), Expect = 9e-40
 Identities = 100/188 (53%), Positives = 115/188 (61%), Gaps = 3/188 (1%)
 Frame = +2

Query: 35  TNLEQKTTQELAMEGQKHLEETIEAEFQILSSMNDELCXXXXXXXXXXXXXXXXXXXXXG 214
           T    KTTQELA+EGQKHLEETI+A +QILSSMNDELC                      
Sbjct: 12  TPQHSKTTQELAIEGQKHLEETIQAAYQILSSMNDELCNPTLWSTTSTSTSTVTSPI--- 68

Query: 215 HNHHSSINGTNGDVS---SDSXXXXXXXFELGGGALDEARLRYKSSVASLRSLLTTIPTS 385
               +S N  NGD +   SDS         +G GALDEAR RYK+SVA+LR +L  IP S
Sbjct: 69  ----TSSNAQNGDANAAVSDSTLELNGGGGVGNGALDEARFRYKNSVAALRDVLAAIPNS 124

Query: 386 RKAKPYEXXXXXXXXXXPMDQDDIEKLEERASTLRKELVNKNKHLKILIDQLRELITDVS 565
            KAKP+E          P DQ +IEKLEERAS LRKEL  KN ++K+LIDQLRELI D+S
Sbjct: 125 HKAKPFETSS-------PADQAEIEKLEERASNLRKELAKKNTYVKLLIDQLRELIADIS 177

Query: 566 TWQSPCSV 589
           TWQ P SV
Sbjct: 178 TWQGPYSV 185


>ref|XP_004138044.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           30-like [Cucumis sativus]
           gi|449532651|ref|XP_004173294.1| PREDICTED: mediator of
           RNA polymerase II transcription subunit 30-like [Cucumis
           sativus]
          Length = 198

 Score =  167 bits (423), Expect = 3e-39
 Identities = 102/200 (51%), Positives = 122/200 (61%), Gaps = 9/200 (4%)
 Frame = +2

Query: 17  MEEKGSTNLE-QKTTQELAMEGQKHLEETIEAEFQILSSMNDELCXXXXXXXXXXXXXXX 193
           MEEK +  L   +TTQELAMEG KHLEETIE+ FQIL SMNDELC               
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 194 XXXXXX----GHNHHSSINGTNGDVSSDSXXXXXXXFELGG----GALDEARLRYKSSVA 349
                     G + HS+    NGD SS+S          GG    GAL+EAR+RYK+SV 
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 350 SLRSLLTTIPTSRKAKPYEXXXXXXXXXXPMDQDDIEKLEERASTLRKELVNKNKHLKIL 529
           +LR++L  IP S+KAK YE          P DQ +I+KLE+  S LRKELV KN H+K+L
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHAS--PADQSEIDKLEQHLSNLRKELVVKNLHIKLL 178

Query: 530 IDQLRELITDVSTWQSPCSV 589
           IDQLR+L+ DVSTWQSPCSV
Sbjct: 179 IDQLRDLVADVSTWQSPCSV 198


>ref|XP_002321708.1| predicted protein [Populus trichocarpa] gi|222868704|gb|EEF05835.1|
           predicted protein [Populus trichocarpa]
          Length = 177

 Score =  165 bits (418), Expect = 1e-38
 Identities = 95/184 (51%), Positives = 118/184 (64%), Gaps = 5/184 (2%)
 Frame = +2

Query: 53  TTQELAMEGQKHLEETIEAEFQILSSMNDELCXXXXXXXXXXXXXXXXXXXXXGHNHHSS 232
           TTQELA+EGQKHLEETI+A +QILSSMNDELC                      +  + +
Sbjct: 1   TTQELAIEGQKHLEETIQAGYQILSSMNDELCNPTLWSTTSTATTAVTSPITSKNAQNGA 60

Query: 233 INGT-NGD----VSSDSXXXXXXXFELGGGALDEARLRYKSSVASLRSLLTTIPTSRKAK 397
           +  T NGD    VS  +         +G GALDEAR RYK+SVA+LR +L  IP S KAK
Sbjct: 61  VVITVNGDANAAVSDSTHELSGGGGGVGNGALDEARFRYKNSVAALRDVLAAIPNSHKAK 120

Query: 398 PYEXXXXXXXXXXPMDQDDIEKLEERASTLRKELVNKNKHLKILIDQLRELITDVSTWQS 577
           P+E          P D+ +I+KLEERAS+LRKEL  KN ++K+LIDQLRE+ITD+STWQ+
Sbjct: 121 PFETSS-------PADEAEIKKLEERASSLRKELAKKNTYVKLLIDQLREIITDISTWQT 173

Query: 578 PCSV 589
           PCSV
Sbjct: 174 PCSV 177


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