BLASTX nr result

ID: Panax21_contig00015423 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00015423
         (641 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532010.1| Heterogeneous nuclear ribonucleoprotein 27C,...   244   1e-62
ref|XP_002272993.1| PREDICTED: uncharacterized protein LOC100246...   243   3e-62
ref|XP_003631031.1| Heterogeneous nuclear ribonucleoprotein A1 [...   233   2e-59
ref|XP_003617976.1| Heterogeneous nuclear ribonucleoprotein A1, ...   233   2e-59
ref|XP_002301585.1| predicted protein [Populus trichocarpa] gi|2...   224   1e-56

>ref|XP_002532010.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
           communis] gi|223528341|gb|EEF30383.1| Heterogeneous
           nuclear ribonucleoprotein 27C, putative [Ricinus
           communis]
          Length = 484

 Score =  244 bits (622), Expect = 1e-62
 Identities = 119/211 (56%), Positives = 141/211 (66%), Gaps = 1/211 (0%)
 Frame = -2

Query: 640 PKELSPSPIRSPISGYNYGLSRMNNFLTGYNQGYSPSAVGGYGVRMDGRFSPITAGRSGF 461
           PKELSP P RSP+ GYNYGLSR+N+FL GY QGY+PSAVGGYG+RMDGRFSP+  GRSGF
Sbjct: 184 PKELSPGPSRSPLGGYNYGLSRVNSFLNGYTQGYTPSAVGGYGLRMDGRFSPVAGGRSGF 243

Query: 460 APFGSGYGMGLNFEPGMSPNYGGNANFNNTISYGRGMSPYYVGNSNRXXXXXXXXXXXXX 281
            PFGSGYGMG+NFEP  SP+YGGNANF++ +SYGRGMSPYY+GN+NR             
Sbjct: 244 PPFGSGYGMGMNFEPAFSPSYGGNANFSSNLSYGRGMSPYYIGNTNRFANPTGYDGGNGG 303

Query: 280 XXXXXXSQTRNLWGTGGLNYGANSTNSXXXXXXXXXXXXXXXXXNSALNWGSSPISP-XX 104
                 S TRNLWG GGLNY ++S +S                 NSA+NWGSS ++    
Sbjct: 304 NSSFFSSVTRNLWGNGGLNYNSSSASSNTYMGSGSGSIGGNNFGNSAVNWGSSTLAAHGG 363

Query: 103 XXXXXXXXXXXGYGGADNSYNFGAGGYGRNS 11
                      GYGG +NS++ G GGYGRNS
Sbjct: 364 GSNASNNNLNFGYGGGENSFSLGTGGYGRNS 394


>ref|XP_002272993.1| PREDICTED: uncharacterized protein LOC100246008 [Vitis vinifera]
          Length = 478

 Score =  243 bits (619), Expect = 3e-62
 Identities = 120/214 (56%), Positives = 140/214 (65%), Gaps = 1/214 (0%)
 Frame = -2

Query: 640 PKELSPSPIRSPISGYNYGLSRMNNFLTGYNQGYSPSAVGGYGVRMDGRFSPITAGRSGF 461
           PKELSP PIRS + G+NYGLSR+N+FL+ YNQGY+PS VGGYGVRMDGRFSPI  GRSGF
Sbjct: 183 PKELSPGPIRSQLGGFNYGLSRVNSFLSAYNQGYAPSTVGGYGVRMDGRFSPIAGGRSGF 242

Query: 460 APFGSGYGMGLNFEPGMSPNYGGNANFNNTISYGRGMSPYYVGNSNRXXXXXXXXXXXXX 281
            PFGSGYGMG+NFEPG+S +YGG+ANFNN ++YGRG++PYY+GN+NR             
Sbjct: 243 PPFGSGYGMGMNFEPGLSQSYGGSANFNNNLNYGRGLNPYYIGNTNRFNSTIGYDGGNGG 302

Query: 280 XXXXXXSQTRNLWGTGGLNYGANSTNSXXXXXXXXXXXXXXXXXNSALNWGSSPIS-PXX 104
                 S TRNLWG GGLN+G NS  S                 NS  +WGSS IS    
Sbjct: 303 NSSFFSSATRNLWGNGGLNFGTNSATSSAFTGSASGTTGGGAFGNSGTSWGSSLISAQGG 362

Query: 103 XXXXXXXXXXXGYGGADNSYNFGAGGYGRNSATT 2
                      GYGG D+SY  G GGYGRNS T+
Sbjct: 363 GSNISSNSGNLGYGGGDSSYGLGVGGYGRNSGTS 396


>ref|XP_003631031.1| Heterogeneous nuclear ribonucleoprotein A1 [Medicago truncatula]
           gi|355525053|gb|AET05507.1| Heterogeneous nuclear
           ribonucleoprotein A1 [Medicago truncatula]
          Length = 476

 Score =  233 bits (594), Expect = 2e-59
 Identities = 113/214 (52%), Positives = 137/214 (64%), Gaps = 1/214 (0%)
 Frame = -2

Query: 640 PKELSPSPIRSPISGYNYGLSRMNNFLTGYNQGYSPSAVGGYGVRMDGRFSPITAGRSGF 461
           PKELSP P RSP+SGYNYGLSR+N+FL G+NQ YSPS VGGYG+R+DGRFSP+  GR+ +
Sbjct: 166 PKELSPGPARSPLSGYNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGGRNAY 225

Query: 460 APFGSGYGMGLNFEPGMSPNYGGNANFNNTISYGRGMSPYYVGNSNRXXXXXXXXXXXXX 281
           APFGSGYGMG+NFEPG+SP +GGNA+FN  +SYGRG++PY++G SNR             
Sbjct: 226 APFGSGYGMGMNFEPGLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYESGNGG 285

Query: 280 XXXXXXSQTRNLWGTGGLNYGANSTNSXXXXXXXXXXXXXXXXXNSALNWGSSPIS-PXX 104
                 S TRNLWG G LNYG +S NS                 N+ +NW SSPIS    
Sbjct: 286 SNSFFSSVTRNLWGNGSLNYGTSSANSNAYIGSGSGNVGGNAFGNTGVNWSSSPISGHGG 345

Query: 103 XXXXXXXXXXXGYGGADNSYNFGAGGYGRNSATT 2
                      GYGG +N Y  G  GYGR+S +T
Sbjct: 346 GNNVSQGSGNLGYGGGNNGYGLGTEGYGRSSGST 379


>ref|XP_003617976.1| Heterogeneous nuclear ribonucleoprotein A1, A2/B1-like protein
           [Medicago truncatula] gi|355519311|gb|AET00935.1|
           Heterogeneous nuclear ribonucleoprotein A1, A2/B1-like
           protein [Medicago truncatula]
          Length = 479

 Score =  233 bits (594), Expect = 2e-59
 Identities = 113/214 (52%), Positives = 137/214 (64%), Gaps = 1/214 (0%)
 Frame = -2

Query: 640 PKELSPSPIRSPISGYNYGLSRMNNFLTGYNQGYSPSAVGGYGVRMDGRFSPITAGRSGF 461
           PKELSP P RSP+SGYNYGLSR+N+FL G+NQ YSPS VGGYG+R+DGRFSP+  GR+ +
Sbjct: 183 PKELSPGPARSPLSGYNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPVAGGRNAY 242

Query: 460 APFGSGYGMGLNFEPGMSPNYGGNANFNNTISYGRGMSPYYVGNSNRXXXXXXXXXXXXX 281
           APFGSGYGMG+NFEPG+SP +GGNA+FN  +SYGRG++PY++G SNR             
Sbjct: 243 APFGSGYGMGMNFEPGLSPGFGGNASFNGNLSYGRGLNPYFIGGSNRFGSPVGYESGNGG 302

Query: 280 XXXXXXSQTRNLWGTGGLNYGANSTNSXXXXXXXXXXXXXXXXXNSALNWGSSPIS-PXX 104
                 S TRNLWG G LNYG +S NS                 N+ +NW SSPIS    
Sbjct: 303 SNSFFSSVTRNLWGNGSLNYGTSSANSNAYIGSGSGNVGGNAFGNTGVNWSSSPISGHGG 362

Query: 103 XXXXXXXXXXXGYGGADNSYNFGAGGYGRNSATT 2
                      GYGG +N Y  G  GYGR+S +T
Sbjct: 363 GNNVSQGSGNLGYGGGNNGYGLGTEGYGRSSGST 396


>ref|XP_002301585.1| predicted protein [Populus trichocarpa] gi|222843311|gb|EEE80858.1|
           predicted protein [Populus trichocarpa]
          Length = 479

 Score =  224 bits (570), Expect = 1e-56
 Identities = 112/211 (53%), Positives = 131/211 (62%), Gaps = 1/211 (0%)
 Frame = -2

Query: 640 PKELSPSPIRSPISGYNYGLSRMNNFLTGYNQGYSPSAVGGYGVRMDGRFSPITAGRSGF 461
           PKELSP P RSP+ GYNYGL+R+N+ L GY QGY+P AVGGYG+RMD RFS +  GRSGF
Sbjct: 184 PKELSPGPSRSPLGGYNYGLNRVNSLLNGYTQGYTPGAVGGYGLRMDDRFSLVAGGRSGF 243

Query: 460 APFGSGYGMGLNFEPGMSPNYGGNANFNNTISYGRGMSPYYVGNSNRXXXXXXXXXXXXX 281
            PFGSGYGMGLNFEP +SP+YGG+ANFN+ +SYGRGMSPYY+GN+N              
Sbjct: 244 PPFGSGYGMGLNFEPALSPSYGGDANFNSNLSYGRGMSPYYIGNTNNLARPVGYDGGNGG 303

Query: 280 XXXXXXSQTRNLWGTGGLNYGANSTNSXXXXXXXXXXXXXXXXXNSALNWGSSPIS-PXX 104
                 S TRNLWG GGLNY  NST+S                 NS  NWGSS +S    
Sbjct: 304 NTSFFSSATRNLWGNGGLNYNTNSTSSNAYMGSGTGSLGGSTFGNSGANWGSSSLSGQGG 363

Query: 103 XXXXXXXXXXXGYGGADNSYNFGAGGYGRNS 11
                      G+G  +NS+  G G Y RNS
Sbjct: 364 GNNVSNSSLNFGHGSGENSFGQGMGSYARNS 394


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