BLASTX nr result

ID: Panax21_contig00015415 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00015415
         (1649 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331321.1| predicted protein [Populus trichocarpa] gi|2...    77   1e-12
ref|XP_002331320.1| f-box family protein [Populus trichocarpa] g...    74   9e-11
ref|XP_002331319.1| f-box family protein [Populus trichocarpa] g...    66   3e-08
ref|XP_002321943.1| f-box family protein [Populus trichocarpa] g...    58   8e-06

>ref|XP_002331321.1| predicted protein [Populus trichocarpa] gi|222873904|gb|EEF11035.1|
           predicted protein [Populus trichocarpa]
          Length = 378

 Score = 76.6 bits (187), Expect(2) = 1e-12
 Identities = 64/187 (34%), Positives = 91/187 (48%), Gaps = 20/187 (10%)
 Frame = +2

Query: 242 EFFSELVNLQNLTLH-LCIMCIEACNIWCPQLVNLKIS----CKIGSTCKFVVSAPKLYS 406
           + FS   NL+NLT+  +C+  IE  NI    L +L+I      +I   CK ++ APKL S
Sbjct: 187 KIFSSCPNLENLTIEDICLNTIENFNIHALNLKSLEILNWRYSRIMRGCKVMLFAPKLTS 246

Query: 407 FNGEGIMPII---VSSDCLEVVNIKIE------------DDISYAAMKLRTEKFEQSLLQ 541
           F  +G  P+    V+   L+ VN+ ++            D+  Y + +  T+  +   L 
Sbjct: 247 FKFDGNTPLFWSEVNLTSLDDVNVVLQRYYYRHDYQFYVDEDEYISGEDETK--QGFCLD 304

Query: 542 LPIMFQGLHSAKILTLDSGTIKALSAVLELLVHQPSPFCNLKYVKLPKGYAHSTIPSAVR 721
           L  M     SAK LTL    I+ LS V   L   PSPF NLKY+KL   +   T+P+ V 
Sbjct: 305 LLKMLHQFCSAKSLTLSMNIIEVLSKVPAALNKHPSPFSNLKYLKLKTDHKDVTLPAHVL 364

Query: 722 TYLLSGS 742
            Y LS S
Sbjct: 365 NYFLSSS 371



 Score = 23.9 bits (50), Expect(2) = 1e-12
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 117 LPTSCFSLPALASLCLYNCELPKS 188
           + T+C  +P +   C +NCE  +S
Sbjct: 130 IDTACRDVPIVLPRCFFNCESLRS 153


>ref|XP_002331320.1| f-box family protein [Populus trichocarpa]
           gi|222873903|gb|EEF11034.1| f-box family protein
           [Populus trichocarpa]
          Length = 453

 Score = 74.3 bits (181), Expect = 9e-11
 Identities = 64/182 (35%), Positives = 87/182 (47%), Gaps = 18/182 (9%)
 Frame = +2

Query: 242 EFFSELVNLQNLTLH-LCIMCIEACNIWCPQLVNLKISC----KIGSTCKFVVSAPKLYS 406
           + FS   NL+NLT+  +C+  IE  NI    L +L+I      +I   CK ++ APKL S
Sbjct: 206 KIFSSCPNLENLTIEDICLNVIENFNIHALSLKSLEILNWRYNRIKQGCKVMLVAPKLTS 265

Query: 407 FNGEGIMPI------IVSSDCLEVVNIKIEDDISYAAMKLRTE------KFEQSL-LQLP 547
           F  +G  P+      + S D + VV  +     +Y    +  E      + EQ L L L 
Sbjct: 266 FKFDGNTPLFWSDVNLTSLDDVNVVLQRYHHSHNYPFYVVEDEYISEEDETEQGLGLNLI 325

Query: 548 IMFQGLHSAKILTLDSGTIKALSAVLELLVHQPSPFCNLKYVKLPKGYAHSTIPSAVRTY 727
            M     SAK LTL    I+ LS V   L   PSPF NLKY+KL   +   T+P+ V  Y
Sbjct: 326 KMLHQFCSAKSLTLSMNIIEILSEVPAALDKHPSPFSNLKYLKLKTDHKDVTLPAHVLNY 385

Query: 728 LL 733
            L
Sbjct: 386 FL 387


>ref|XP_002331319.1| f-box family protein [Populus trichocarpa]
           gi|222873902|gb|EEF11033.1| f-box family protein
           [Populus trichocarpa]
          Length = 453

 Score = 65.9 bits (159), Expect = 3e-08
 Identities = 62/182 (34%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
 Frame = +2

Query: 242 EFFSELVNLQNLTLH-LCIMCIEACNIWCPQLVNLKISC----KIGSTCKFVVSAPKLYS 406
           + FS   NL+NL +  + +  IE  NI    L +L+I      +I   CK ++ APKL S
Sbjct: 206 KIFSTCPNLENLKIEDIYLNTIENFNIHALNLKSLEILNWRYGRIMRGCKVMLFAPKLTS 265

Query: 407 FNGEGIMPI------IVSSDCLEVVNIKIEDDISYAAMKLRTE------KFEQSL-LQLP 547
           F   G  P+      + S D + VV  + +   +Y    +  E      + EQ L L L 
Sbjct: 266 FKFYGNTPLFWSEVNLTSLDDVNVVLQRYQHSHNYPFYVVEDEYISEEDETEQGLGLNLI 325

Query: 548 IMFQGLHSAKILTLDSGTIKALSAVLELLVHQPSPFCNLKYVKLPKGYAHSTIPSAVRTY 727
            M     SAK LTL    I+ LS V   L   PSPF NLKY+KL   +   T+P+ V  Y
Sbjct: 326 KMLHQFCSAKSLTLSMNIIEILSEVPAALDKHPSPFSNLKYLKLKTDHKDVTLPAHVLNY 385

Query: 728 LL 733
            L
Sbjct: 386 FL 387


>ref|XP_002321943.1| f-box family protein [Populus trichocarpa]
           gi|222868939|gb|EEF06070.1| f-box family protein
           [Populus trichocarpa]
          Length = 360

 Score = 57.8 bits (138), Expect = 8e-06
 Identities = 59/204 (28%), Positives = 99/204 (48%), Gaps = 14/204 (6%)
 Frame = +2

Query: 191 LGFA-----SFNKSVRFWENRSEF---FSELVNLQNLTLHLC------IMCIEACNIWCP 328
           LGFA     S + S   + N S+F   F+  + L+NL+L  C      ++ I    +   
Sbjct: 159 LGFALPNLISLSLSHCSFTNPSDFDDPFASCLKLKNLSLRSCSFLSSKVLKISGLQLLNL 218

Query: 329 QLVNLKISCKIGSTCKFVVSAPKLYSFNGEGIMPIIVSSDCLEVVNIKIEDDISYAAMKL 508
           ++V L      G   +  + APKL SF  +  +  +V    L + ++    +I+   +  
Sbjct: 219 EIVGLGYMNLAGLLYRIDIFAPKLISFVYK--LSHVVDFSGLHLPSL----NIARVHVCT 272

Query: 509 RTEKFEQSLLQLPIMFQGLHSAKILTLDSGTIKALSAVLELLVHQPSPFCNLKYVKLPKG 688
           + +K +++ L L  MF+GL +A+ + L S TI+ L +   LL  +PSPF  LK +++   
Sbjct: 273 KQDKKKEAYLGLINMFKGLGNAQSVMLHSQTIEVLGSFPGLLEQEPSPFKRLKSLQVAPN 332

Query: 689 YAHSTIPSAVRTYLLSGSPSATII 760
                +P  V TYLL G+P A  I
Sbjct: 333 -NKPFVPPHVMTYLLGGTPLAETI 355


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