BLASTX nr result

ID: Panax21_contig00015383 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00015383
         (1296 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279464.2| PREDICTED: DNA repair protein recA homolog 3...   444   e-122
ref|XP_002308284.1| predicted protein [Populus trichocarpa] gi|2...   437   e-120
ref|XP_002330492.1| predicted protein [Populus trichocarpa] gi|2...   432   e-118
ref|XP_002514123.1| DNA repair protein reca, putative [Ricinus c...   429   e-118
ref|XP_003595205.1| RecA [Medicago truncatula] gi|355484253|gb|A...   425   e-116

>ref|XP_002279464.2| PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like
            [Vitis vinifera] gi|297738654|emb|CBI27899.3| unnamed
            protein product [Vitis vinifera]
          Length = 421

 Score =  444 bits (1143), Expect = e-122
 Identities = 227/306 (74%), Positives = 259/306 (84%), Gaps = 3/306 (0%)
 Frame = +1

Query: 139  QGRVVEIYGPEATGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAKAIGVNTRNLLIS 318
            +GRVVEIYGPEA+GKTTLALHVIAEAQKQGGYCVFVDAEHALDPALA+AIGVNT+NLL+S
Sbjct: 111  KGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAEAIGVNTQNLLLS 170

Query: 319  QPDCGEQALSLVDTIIRSGXXXXXXXXXXXXLVPKSELDGEMGDAHMAMQARLMSQALRK 498
            QPDCGEQALSLVDT+IRSG            LVPK ELDGEMGDAHMAMQARLMSQALRK
Sbjct: 171  QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 230

Query: 499  LSHSLSLSQTILIFINQVRAKLS-ITGFGGPTEVTCGGNALKFYASMRLNVRRTGFVKKG 675
            LSHSLSLSQTILIFINQVRAKLS   GFGGPTEVTCGGNALKFYAS+RLN++R G VKKG
Sbjct: 231  LSHSLSLSQTILIFINQVRAKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKG 290

Query: 676  EETIGNQVLVKIVKNKHAPPFRTAQFELEFGKGICQESELIELGCKHKFITKAGSFFY-M 852
            EETIG+QVLVK+VKNKHAPPF+TAQFELEFGKGIC+ESE++ELGCKHKFI K G   Y  
Sbjct: 291  EETIGSQVLVKVVKNKHAPPFKTAQFELEFGKGICRESEIVELGCKHKFIIKGGGAMYSY 350

Query: 853  NDTTFHGKDALKCHLAENTSVKDDLLMKIREKLT-DAKPEKEMETKSADEGPNVDIISPE 1029
            N  +F GKDA+K  L++N S +++L+ K+REKL  +   EKE+E ++ DE      + P+
Sbjct: 351  NGQSFRGKDAIKQFLSQNESEREELMRKLREKLVGETNKEKELEAEAVDEDIAEGTVPPD 410

Query: 1030 TSDEDV 1047
            T+DE+V
Sbjct: 411  TTDEEV 416


>ref|XP_002308284.1| predicted protein [Populus trichocarpa] gi|222854260|gb|EEE91807.1|
            predicted protein [Populus trichocarpa]
          Length = 418

 Score =  437 bits (1125), Expect = e-120
 Identities = 222/306 (72%), Positives = 254/306 (83%)
 Frame = +1

Query: 139  QGRVVEIYGPEATGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAKAIGVNTRNLLIS 318
            +GRVVEI+GPEA+GKTTLALHVIAEAQKQGGYCVFVDAEHALD +LAKAIGVNT NLL+S
Sbjct: 111  KGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDSSLAKAIGVNTENLLLS 170

Query: 319  QPDCGEQALSLVDTIIRSGXXXXXXXXXXXXLVPKSELDGEMGDAHMAMQARLMSQALRK 498
            QPDCGEQALSLVDT+IRSG            LVPKSELDGEMGDAHMAMQARLMSQALRK
Sbjct: 171  QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRK 230

Query: 499  LSHSLSLSQTILIFINQVRAKLSITGFGGPTEVTCGGNALKFYASMRLNVRRTGFVKKGE 678
            LSHSLS SQTIL+FINQVRAKLS  GFGGPTEVTCGGNALKFYAS+RLN+RR GF+KKGE
Sbjct: 231  LSHSLSQSQTILVFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGE 290

Query: 679  ETIGNQVLVKIVKNKHAPPFRTAQFELEFGKGICQESELIELGCKHKFITKAGSFFYMND 858
            ET G QV VKIVKNK APPF+T QFELEFGKGI +ESE+IEL  KHK I K+GSF+  N 
Sbjct: 291  ETTGTQVQVKIVKNKLAPPFKTVQFELEFGKGISRESEIIELALKHKLIKKSGSFYDCNG 350

Query: 859  TTFHGKDALKCHLAENTSVKDDLLMKIREKLTDAKPEKEMETKSADEGPNVDIISPETSD 1038
              +HGK+A K  LA N  V+++L+MK+REKL + +  +E+  +S D  P  +IISP+++D
Sbjct: 351  KKYHGKEAFKEFLAHNDDVQEELMMKLREKLLEGETGQELGDESTDGEPTQEIISPDSTD 410

Query: 1039 EDVMIA 1056
            E+V  A
Sbjct: 411  EEVAAA 416


>ref|XP_002330492.1| predicted protein [Populus trichocarpa] gi|222872426|gb|EEF09557.1|
            predicted protein [Populus trichocarpa]
          Length = 357

 Score =  432 bits (1110), Expect = e-118
 Identities = 216/302 (71%), Positives = 253/302 (83%)
 Frame = +1

Query: 139  QGRVVEIYGPEATGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAKAIGVNTRNLLIS 318
            +GRVVEI+GPEA+GKTTLALHVIAEAQKQGGYCVF+DAEHALD +LAKAIGVNT NLL+S
Sbjct: 56   KGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCVFMDAEHALDSSLAKAIGVNTENLLLS 115

Query: 319  QPDCGEQALSLVDTIIRSGXXXXXXXXXXXXLVPKSELDGEMGDAHMAMQARLMSQALRK 498
            QPDCGEQALSLVDT+IRSG            LVPKSELDGEMGDAHMAMQARLMSQALRK
Sbjct: 116  QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRK 175

Query: 499  LSHSLSLSQTILIFINQVRAKLSITGFGGPTEVTCGGNALKFYASMRLNVRRTGFVKKGE 678
            LSHSLS SQT+LIFINQVRAKLS  GFGGPTEVTCGGNALKFYAS+RLN+RR GF+KKGE
Sbjct: 176  LSHSLSQSQTVLIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGE 235

Query: 679  ETIGNQVLVKIVKNKHAPPFRTAQFELEFGKGICQESELIELGCKHKFITKAGSFFYMND 858
            ET G QV VKI KNK APPF+T QFELEFGKGI +ESE+IEL  KHKFI K G+F+  N 
Sbjct: 236  ETTGTQVQVKIAKNKLAPPFKTVQFELEFGKGISRESEIIELAVKHKFIKKNGAFYDCNG 295

Query: 859  TTFHGKDALKCHLAENTSVKDDLLMKIREKLTDAKPEKEMETKSADEGPNVDIISPETSD 1038
              +HGK+AL+  LA N  V+++L+MK+REKL +A+ ++E++ ++ D  P  + I P+++D
Sbjct: 296  RKYHGKEALREFLAHNDDVQEELMMKLREKLLEAETDQELKDETTDGEPTQESIPPDSTD 355

Query: 1039 ED 1044
            E+
Sbjct: 356  EE 357


>ref|XP_002514123.1| DNA repair protein reca, putative [Ricinus communis]
            gi|223546579|gb|EEF48077.1| DNA repair protein reca,
            putative [Ricinus communis]
          Length = 380

 Score =  429 bits (1104), Expect = e-118
 Identities = 217/309 (70%), Positives = 256/309 (82%), Gaps = 1/309 (0%)
 Frame = +1

Query: 139  QGRVVEIYGPEATGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAKAIGVNTRNLLIS 318
            +GRVVEIYGPEA+GKTTLALHVIAEAQKQGGYCVFVDAEHALD +LA++IGVNT NLL+S
Sbjct: 71   KGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDSSLAQSIGVNTENLLLS 130

Query: 319  QPDCGEQALSLVDTIIRSGXXXXXXXXXXXXLVPKSELDGEMGDAHMAMQARLMSQALRK 498
            QPDCGEQALSLVDT+IRSG            LVPK ELDGEMGDAHMAMQARLMSQALRK
Sbjct: 131  QPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 190

Query: 499  LSHSLSLSQTILIFINQVRAKLS-ITGFGGPTEVTCGGNALKFYASMRLNVRRTGFVKKG 675
            LSHSLS S+T+LIFINQVRAKLS   GFGGP EVTCGGNALKFYAS+RLN+RR G +KKG
Sbjct: 191  LSHSLSQSETVLIFINQVRAKLSTFGGFGGPQEVTCGGNALKFYASVRLNIRRVGLIKKG 250

Query: 676  EETIGNQVLVKIVKNKHAPPFRTAQFELEFGKGICQESELIELGCKHKFITKAGSFFYMN 855
            EETIG+QV VKIVKNK APPF+T QFELEFGKGIC++SE++ELG KHKF+ KAGSF+  N
Sbjct: 251  EETIGSQVQVKIVKNKLAPPFKTVQFELEFGKGICRDSEIMELGVKHKFLGKAGSFYNYN 310

Query: 856  DTTFHGKDALKCHLAENTSVKDDLLMKIREKLTDAKPEKEMETKSADEGPNVDIISPETS 1035
               FHGK+A +  LAEN + +++L+MK+REKL +A  +K   ++  DE    + ISP+++
Sbjct: 311  GQNFHGKEAFRKFLAENDNAREELVMKLREKLLNAHIDKGQGSEVTDEALVEETISPDST 370

Query: 1036 DEDVMIAAD 1062
            DE+ + A +
Sbjct: 371  DEEAVTAVE 379


>ref|XP_003595205.1| RecA [Medicago truncatula] gi|355484253|gb|AES65456.1| RecA [Medicago
            truncatula]
          Length = 424

 Score =  425 bits (1093), Expect = e-116
 Identities = 213/309 (68%), Positives = 254/309 (82%), Gaps = 1/309 (0%)
 Frame = +1

Query: 139  QGRVVEIYGPEATGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAKAIGVNTRNLLIS 318
            +GRVVEI+GPEA+GKTTLALHVIAEAQKQGGYC F+DAEHALD +LA++IGVNT NLL+S
Sbjct: 116  KGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCAFIDAEHALDKSLAESIGVNTENLLLS 175

Query: 319  QPDCGEQALSLVDTIIRSGXXXXXXXXXXXXLVPKSELDGEMGDAHMAMQARLMSQALRK 498
            QPDCGEQALSLVDT+IRSG            LVPK ELDGEMGDAHMAMQARLMSQALRK
Sbjct: 176  QPDCGEQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRK 235

Query: 499  LSHSLSLSQTILIFINQVRAKLS-ITGFGGPTEVTCGGNALKFYASMRLNVRRTGFVKKG 675
            L HSLSLSQ ILIFINQVR+K+S   GFGGPTEVTCGGNALKFY+S+RLN++R GFVKKG
Sbjct: 236  LCHSLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRVGFVKKG 295

Query: 676  EETIGNQVLVKIVKNKHAPPFRTAQFELEFGKGICQESELIELGCKHKFITKAGSFFYMN 855
            EET+G+QVLVK+VKNKHAPPF+TAQFELEFGKGIC+E+E+IEL  KHKFI K+GSF+  N
Sbjct: 296  EETVGSQVLVKVVKNKHAPPFKTAQFELEFGKGICREAEIIELSIKHKFIKKSGSFYEYN 355

Query: 856  DTTFHGKDALKCHLAENTSVKDDLLMKIREKLTDAKPEKEMETKSADEGPNVDIISPETS 1035
               +HGKDALK HL     ++ DL  K+REKL +A+ E   E++        +++SP+++
Sbjct: 356  GKNYHGKDALKSHLINGDGLQ-DLTTKLREKLLNAETETVSESQEMVGDVTEEMLSPDST 414

Query: 1036 DEDVMIAAD 1062
            DE+  + A+
Sbjct: 415  DEETAVVAE 423


Top