BLASTX nr result

ID: Panax21_contig00015339 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00015339
         (1745 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310063.1| predicted protein [Populus trichocarpa] gi|2...   411   e-112
ref|XP_002306375.1| predicted protein [Populus trichocarpa] gi|2...   407   e-111
ref|XP_002530980.1| conserved hypothetical protein [Ricinus comm...   376   e-101
ref|XP_004139814.1| PREDICTED: probable RNA helicase SDE3-like [...   209   1e-51
ref|XP_002332671.1| hypothetical protein POPTRDRAFT_789212 [Popu...   208   4e-51

>ref|XP_002310063.1| predicted protein [Populus trichocarpa] gi|222852966|gb|EEE90513.1|
            predicted protein [Populus trichocarpa]
          Length = 687

 Score =  411 bits (1057), Expect = e-112
 Identities = 213/325 (65%), Positives = 255/325 (78%), Gaps = 2/325 (0%)
 Frame = +1

Query: 10   EPFQGIIYRVVKSNIVLVEFGDDFHAHHYSSCKYDVKFSFNRVCLKRAHQAISSASDVLF 189
            EP QGIIYRV +S  V+VEFG DF   H+S+ KYDV FSFNRVCLKRAH AI +ASD LF
Sbjct: 359  EPCQGIIYRVERSTRVVVEFGKDFLLQHHSTRKYDVSFSFNRVCLKRAHHAIEAASDPLF 418

Query: 190  TNFLFPDCIAKRGL-ISKQLLSISHKLDTEQVSAVCRILSLKGSPPYLVEGPLSVTIAKQ 366
             +FLFPD ++K+   IS  L   +HKLD  Q SAV  ILS +G PPY+VEGPL +    +
Sbjct: 419  KSFLFPDGVSKKIFPISTPLHFCNHKLDVYQSSAVREILSFQGPPPYIVEGPLCLNKFSE 478

Query: 367  LSRTGMVVREAVLQLCRTSSVNRILICAPLNSTCDVLMRSLGKELPESDIFRANAAFREL 546
            LSRTG+V++EAVLQ+ ++SS  RILICAP+N TCD+LM+SL  ++P+SD+FRANAAFRE+
Sbjct: 479  LSRTGLVIQEAVLQIYQSSSKLRILICAPINRTCDLLMQSLNNDIPKSDMFRANAAFREI 538

Query: 547  DEVPDDILPSCPYKEECFSCPSLSQLKKFKVILSTFMSAFRLHNEGIKAGHFSHIFLVDA 726
            D VP DILPSC YK ECF+CPSL +L+KF+VILSTF+S+FRL NEGI AGHFSHIFLVDA
Sbjct: 539  DGVPIDILPSCAYKGECFTCPSLQELRKFRVILSTFVSSFRLRNEGIAAGHFSHIFLVDA 598

Query: 727  SSATEPETMVPLTNLANEMTKVVINGAPGNESRWVRSYIARQNGLKMSYFERLRERKLYR 906
            SSATEPE MVPL NLA+E T V++ GAPGN S WVRS IAR+NGL  SYFERLR  K YR
Sbjct: 599  SSATEPEAMVPLANLASEETAVIVTGAPGNHSGWVRSNIARKNGLMTSYFERLRHSKPYR 658

Query: 907  SLNPEFITELKHVGREA-GTYSSRS 978
            SL P+FIT+L    +E+ G YS  S
Sbjct: 659  SLLPKFITQLADPQKESVGDYSYAS 683


>ref|XP_002306375.1| predicted protein [Populus trichocarpa] gi|222855824|gb|EEE93371.1|
            predicted protein [Populus trichocarpa]
          Length = 773

 Score =  407 bits (1045), Expect = e-111
 Identities = 207/314 (65%), Positives = 254/314 (80%), Gaps = 2/314 (0%)
 Frame = +1

Query: 1    RKVEPFQGIIYRVVKSNIVLVEFGDDFHAHHYSSCKYDVKFSFNRVCLKRAHQAISSASD 180
            +K EP+QG+IYRVV+S IVLVEFG+DF   H+S+ +YDV FSFNRVCLKRAHQAI +ASD
Sbjct: 438  QKTEPYQGVIYRVVRSTIVLVEFGEDFLLQHHSTREYDVSFSFNRVCLKRAHQAIEAASD 497

Query: 181  VLFTNFLFPDCIAKRGL-ISKQLLSISHKLDTEQVSAVCRILSLKGSPPYLVEGPL-SVT 354
              F NFLFP+ + ++ +  S  L  I+HKLD  Q SAV  ILS +G PPYLVEGPL S  
Sbjct: 498  PSFKNFLFPNFVHRKSIPTSTPLHFINHKLDAYQRSAVHEILSFRGPPPYLVEGPLCSKE 557

Query: 355  IAKQLSRTGMVVREAVLQLCRTSSVNRILICAPLNSTCDVLMRSLGKELPESDIFRANAA 534
             +KQLSR G+VV+EAVLQ+ ++SS +RILICAP+N TCDVLM+SL  ++PESD+FRANAA
Sbjct: 558  YSKQLSRIGLVVQEAVLQIYQSSSKHRILICAPINRTCDVLMQSLKIDIPESDMFRANAA 617

Query: 535  FRELDEVPDDILPSCPYKEECFSCPSLSQLKKFKVILSTFMSAFRLHNEGIKAGHFSHIF 714
            FRE+D VP DIL SC YK +CF+CPS+ +L+KF+VILSTF+S+FRLHNEGI AGHFSHIF
Sbjct: 618  FREIDGVPIDILTSCVYKRDCFTCPSIRELRKFRVILSTFVSSFRLHNEGIVAGHFSHIF 677

Query: 715  LVDASSATEPETMVPLTNLANEMTKVVINGAPGNESRWVRSYIARQNGLKMSYFERLRER 894
            LV+ASSATEPE MV L NLA+E T V++ GAPGN S WVRS IAR+NGL  SYFERLR+ 
Sbjct: 678  LVNASSATEPEAMVALANLASENTAVIVTGAPGNHSGWVRSNIARENGLMTSYFERLRDS 737

Query: 895  KLYRSLNPEFITEL 936
            K Y + +P+FI +L
Sbjct: 738  KPYWNSHPKFIMQL 751


>ref|XP_002530980.1| conserved hypothetical protein [Ricinus communis]
            gi|223529456|gb|EEF31415.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 710

 Score =  376 bits (965), Expect = e-101
 Identities = 194/318 (61%), Positives = 239/318 (75%), Gaps = 9/318 (2%)
 Frame = +1

Query: 10   EPFQGIIYRVVKSNIVLVEFGDDFHAHHYSSCKYDVKFSFNRVCLKRAHQAISSASDVLF 189
            EPFQGIIYRV +S  VLVEFG+DFHA H S  KYDV FSFNRVCL+RAHQAI +ASD  F
Sbjct: 386  EPFQGIIYRVQRSTTVLVEFGEDFHAQHCSFQKYDVSFSFNRVCLRRAHQAIEAASDPSF 445

Query: 190  TNFLFPDCIAKRGLISKQLLSISHKLDTEQVSAVCRILSLKGSPPYLVEGPLSVTI---- 357
             NF+FP    +R   S   L+  +KLD    +AV RI+++  SPPYL+EGP  V      
Sbjct: 446  ENFIFPSWGLRRLSSSSPNLNYINKLDANLNAAVHRIITIMESPPYLLEGPPCVAKVEVK 505

Query: 358  -----AKQLSRTGMVVREAVLQLCRTSSVNRILICAPLNSTCDVLMRSLGKELPESDIFR 522
                 +KQLS TG+++++AV ++ R+S   RILICAP+N TCDVLMRSL KE+PES++FR
Sbjct: 506  RKECNSKQLSSTGLIIQQAVFRIYRSSQKYRILICAPINRTCDVLMRSL-KEIPESEMFR 564

Query: 523  ANAAFRELDEVPDDILPSCPYKEECFSCPSLSQLKKFKVILSTFMSAFRLHNEGIKAGHF 702
            ANAAFRE+D VP DIL S  YK +CF+CP L +L+KFK+ILST++S+F+LHNEGI AGHF
Sbjct: 565  ANAAFREIDGVPTDILASSLYKGDCFACPKLQELRKFKIILSTYVSSFQLHNEGIAAGHF 624

Query: 703  SHIFLVDASSATEPETMVPLTNLANEMTKVVINGAPGNESRWVRSYIARQNGLKMSYFER 882
            SHIF+VDASSATEPE MV L N ANE T V++ GAP N S WVRS +AR+NGL  SYFER
Sbjct: 625  SHIFMVDASSATEPEAMVALANFANEKTTVIVTGAPRNHSGWVRSDLARKNGLMKSYFER 684

Query: 883  LRERKLYRSLNPEFITEL 936
            L ER  Y++L+P FI +L
Sbjct: 685  LCERTPYKNLDPNFIMQL 702


>ref|XP_004139814.1| PREDICTED: probable RNA helicase SDE3-like [Cucumis sativus]
            gi|449492596|ref|XP_004159043.1| PREDICTED: probable RNA
            helicase SDE3-like [Cucumis sativus]
          Length = 886

 Score =  209 bits (533), Expect = 1e-51
 Identities = 122/315 (38%), Positives = 191/315 (60%), Gaps = 5/315 (1%)
 Frame = +1

Query: 7    VEPFQGIIYRVVKSNIVLVEFGDDFHAHHYSSCKYDVKFSFNRVCLKRAHQAISSASDVL 186
            V  +QG I+ V +++ V ++F  +FH +H    +Y+V+F++NR+ ++R +QA+ +A D L
Sbjct: 314  VSAYQGYIHHV-EADEVYLKFAPEFHINHRDGNQYNVQFTYNRINMRRFYQAVDAA-DSL 371

Query: 187  FTNFLFPDCIAKRGLISKQ-LLSISHKLDTEQVSAVCRILSLKGSPPYLVEGPLSVTIAK 363
               FLFP   ++R  I+   L+ ++H ++ EQ+  V  IL  KG+PPYLV GP       
Sbjct: 372  AKEFLFPYEFSERRCINTTPLVPLTHNINEEQMRCVQMILGCKGAPPYLVHGPPGT---- 427

Query: 364  QLSRTGMVVREAVLQLCRTSSVNRILICAPLNSTCDVLMRSL----GKELPESDIFRANA 531
               +T  +V EA+LQL  T    R+L+CAP NS  D ++  L    G E+  +D+FR NA
Sbjct: 428  --GKTQTLV-EAILQLYTTRKNARMLVCAPSNSAADHILEKLLNQEGVEIRNNDVFRLNA 484

Query: 532  AFRELDEVPDDILPSCPYKEECFSCPSLSQLKKFKVILSTFMSAFRLHNEGIKAGHFSHI 711
            + R+ DE+  DILP C + E+ F CP  + L ++++I+ST+MS   L+ E IK GHFSHI
Sbjct: 485  STRQYDEIKPDILPYCFFDEQIFRCPPRNALVRYRIIVSTYMSTSLLYAEDIKRGHFSHI 544

Query: 712  FLVDASSATEPETMVPLTNLANEMTKVVINGAPGNESRWVRSYIARQNGLKMSYFERLRE 891
            FL +A  A+EPE+++P++NL  + T V++ G P      V S  A   GL  SY ERL E
Sbjct: 545  FLDEAGQASEPESIIPVSNLCLKKTVVILAGDPMQLGPVVYSKEAEIYGLGKSYLERLFE 604

Query: 892  RKLYRSLNPEFITEL 936
             + Y + +  ++ +L
Sbjct: 605  CEYYSTGDENYVIKL 619


>ref|XP_002332671.1| hypothetical protein POPTRDRAFT_789212 [Populus trichocarpa]
            gi|222836465|gb|EEE74872.1| hypothetical protein
            POPTRDRAFT_789212 [Populus trichocarpa]
          Length = 894

 Score =  208 bits (529), Expect = 4e-51
 Identities = 126/313 (40%), Positives = 183/313 (58%), Gaps = 5/313 (1%)
 Frame = +1

Query: 13   PFQGIIYRVVKSNIVLVEFGDDFHAHHYSSCKYDVKFSFNRVCLKRAHQAISSASDVLFT 192
            P+QG IYRV +++ V ++F  +FH+ H     Y+V F +NRV ++R +QAI +A D L T
Sbjct: 312  PYQGYIYRV-EADEVYLKFYQEFHSCHNDGHLYNVHFKYNRVSMRRLYQAIDAAKD-LET 369

Query: 193  NFLFPDCIAKRGLI-SKQLLSISHKLDTEQVSAVCRILSLKGSPPYLVEGPLSVTIAKQL 369
              LFP   +   LI +  L+ IS  L+ EQ+ +V  IL  KG PPY++ GP         
Sbjct: 370  EMLFPSETSGSRLIETSTLVPISCSLNEEQICSVEMILGCKGGPPYVIYGPPGT------ 423

Query: 370  SRTGMVVREAVLQLCRTSSVNRILICAPLNSTCDVLMRSLGKE----LPESDIFRANAAF 537
             +T M + EA+LQL +     RIL+CAP NS  D L+  L  E    + E +IFR NA  
Sbjct: 424  GKT-MTIIEAILQLYQNRKHARILVCAPSNSAADHLLEKLLSEEAVHIQEKEIFRLNATS 482

Query: 538  RELDEVPDDILPSCPYKEECFSCPSLSQLKKFKVILSTFMSAFRLHNEGIKAGHFSHIFL 717
            R  D++  D++  C + E  F+CP L  L ++++I+ST+MSA  L+ EG+K G FSHIFL
Sbjct: 483  RPFDDIKPDLIRFCLFDEHIFTCPPLGALTRYRIIISTYMSASLLNAEGVKRGQFSHIFL 542

Query: 718  VDASSATEPETMVPLTNLANEMTKVVINGAPGNESRWVRSYIARQNGLKMSYFERLRERK 897
             +A  A+EPE+M+ ++N  N  T VV+ G P      + S  A   GL  SY ERL E +
Sbjct: 543  DEAGQASEPESMISVSNFCNRDTVVVLAGDPMQLGPVIFSRDAESYGLGKSYLERLFECE 602

Query: 898  LYRSLNPEFITEL 936
             Y S +  ++T+L
Sbjct: 603  SYDSGDENYVTKL 615


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