BLASTX nr result

ID: Panax21_contig00015299 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00015299
         (478 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26931.3| unnamed protein product [Vitis vinifera]               92   3e-23
ref|XP_002534507.1| membrane associated ring finger 1,8, putativ...    86   5e-20
ref|XP_002270912.1| PREDICTED: uncharacterized protein LOC100258...    86   3e-19
ref|XP_002280349.2| PREDICTED: uncharacterized protein LOC100259...    96   3e-18
ref|XP_002312427.1| predicted protein [Populus trichocarpa] gi|2...    76   3e-17

>emb|CBI26931.3| unnamed protein product [Vitis vinifera]
          Length = 277

 Score = 92.4 bits (228), Expect(2) = 3e-23
 Identities = 42/54 (77%), Positives = 48/54 (88%)
 Frame = +2

Query: 11  IPMNLRGNWEIARRDLNNPRFIAMVSTDRNFLGTTYDEYADSTSRSLMCCRSVA 172
           IP+NLRGNWEI+R +LNNPRFIAMVSTDRNFL   Y+E+  STSRS+MCCRSVA
Sbjct: 137 IPINLRGNWEISRGELNNPRFIAMVSTDRNFLDPDYNEFTTSTSRSMMCCRSVA 190



 Score = 40.8 bits (94), Expect(2) = 3e-23
 Identities = 20/36 (55%), Positives = 28/36 (77%)
 Frame = +1

Query: 160 SFSSCIFILLQTSGIIVSIYIILRAVTAVHRRR*QQ 267
           +F   + +LL+T+GII+ IYI+LRAVTA+ RR  QQ
Sbjct: 214 TFPLFMLVLLRTAGIILPIYIMLRAVTAIQRRPRQQ 249


>ref|XP_002534507.1| membrane associated ring finger 1,8, putative [Ricinus communis]
           gi|223525156|gb|EEF27877.1| membrane associated ring
           finger 1,8, putative [Ricinus communis]
          Length = 242

 Score = 85.9 bits (211), Expect(2) = 5e-20
 Identities = 38/69 (55%), Positives = 50/69 (72%)
 Frame = +2

Query: 2   LGSIPMNLRGNWEIARRDLNNPRFIAMVSTDRNFLGTTYDEYADSTSRSLMCCRSVAAFL 181
           +G +PMN RGNWE +RRDLN PRFIAMVSTD NFL   Y+E   +++R+L+CCRSV   L
Sbjct: 124 IGRLPMNFRGNWESSRRDLNGPRFIAMVSTDHNFLNPDYEEEYSASTRNLICCRSVLIAL 183

Query: 182 FSYKLQGLL 208
              +  G++
Sbjct: 184 LFLRTAGII 192



 Score = 36.6 bits (83), Expect(2) = 5e-20
 Identities = 16/29 (55%), Positives = 25/29 (86%)
 Frame = +1

Query: 181 ILLQTSGIIVSIYIILRAVTAVHRRR*QQ 267
           + L+T+GII+ I++++RAVTA+ RRR QQ
Sbjct: 184 LFLRTAGIILPIFVMVRAVTALQRRRFQQ 212


>ref|XP_002270912.1| PREDICTED: uncharacterized protein LOC100258737 [Vitis vinifera]
           gi|296087202|emb|CBI33576.3| unnamed protein product
           [Vitis vinifera]
          Length = 262

 Score = 85.9 bits (211), Expect(2) = 3e-19
 Identities = 38/56 (67%), Positives = 45/56 (80%)
 Frame = +2

Query: 5   GSIPMNLRGNWEIARRDLNNPRFIAMVSTDRNFLGTTYDEYADSTSRSLMCCRSVA 172
           G IPMN RGNWE++RRD N+PRFIAMV++DRNFL T  DEY    SRS++CCR VA
Sbjct: 125 GGIPMNFRGNWEVSRRDANHPRFIAMVASDRNFLDTDIDEYPAPNSRSVICCRIVA 180



 Score = 33.9 bits (76), Expect(2) = 3e-19
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = +1

Query: 160 SFSSCIFILLQTSGIIVSIYIILRAVTAVHRRR*QQTINHM 282
           SF+    ++L+  GI++ +YI+++A TA  RRR QQ   ++
Sbjct: 204 SFTLFTLLMLRAIGILLPVYIMVKACTAFQRRRHQQDARNL 244


>ref|XP_002280349.2| PREDICTED: uncharacterized protein LOC100259487 [Vitis vinifera]
          Length = 240

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 44/66 (66%), Positives = 53/66 (80%)
 Frame = +2

Query: 11  IPMNLRGNWEIARRDLNNPRFIAMVSTDRNFLGTTYDEYADSTSRSLMCCRSVAAFLFSY 190
           IP+NLRGNWEI+R +LNNPRFIAMVSTDRNFL   Y+E+  STSRS+MCCRSVA  L   
Sbjct: 127 IPINLRGNWEISRGELNNPRFIAMVSTDRNFLDPDYNEFTTSTSRSMMCCRSVAIILVLL 186

Query: 191 KLQGLL 208
           +  G++
Sbjct: 187 RTAGII 192


>ref|XP_002312427.1| predicted protein [Populus trichocarpa] gi|222852247|gb|EEE89794.1|
           predicted protein [Populus trichocarpa]
          Length = 233

 Score = 76.3 bits (186), Expect(2) = 3e-17
 Identities = 33/53 (62%), Positives = 42/53 (79%)
 Frame = +2

Query: 14  PMNLRGNWEIARRDLNNPRFIAMVSTDRNFLGTTYDEYADSTSRSLMCCRSVA 172
           P+N RGNWE +RR+LN P FIA+VST+RNFL   YDEYA ST+R+ + CR +A
Sbjct: 127 PVNFRGNWETSRRELNGPHFIAVVSTERNFLNNDYDEYAASTTRNAIYCRLIA 179



 Score = 37.0 bits (84), Expect(2) = 3e-17
 Identities = 16/32 (50%), Positives = 26/32 (81%)
 Frame = +1

Query: 157 LSFSSCIFILLQTSGIIVSIYIILRAVTAVHR 252
           +SF   + + L+T+GII+SIY++L+AVTA+ R
Sbjct: 202 ISFPVFMSLFLRTAGIILSIYVMLKAVTAIQR 233


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